Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21210 | 3' | -62.5 | NC_004778.3 | + | 61959 | 0.67 | 0.541021 |
Target: 5'- cGCGUucucgaacaugucGG-GGCGCUUGCCGCugCGCg- -3' miRNA: 3'- -CGCA-------------CCaCCGCGGGUGGUGugGCGgc -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 95253 | 0.68 | 0.449828 |
Target: 5'- gGCaUGGUGcgccGCGgCgACCGCACCGUCGc -3' miRNA: 3'- -CGcACCAC----CGCgGgUGGUGUGGCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 81752 | 0.68 | 0.458671 |
Target: 5'- cGCGgcgGGUGGCGgaCCG--ACugCGCCGg -3' miRNA: 3'- -CGCa--CCACCGCg-GGUggUGugGCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 50210 | 0.68 | 0.466709 |
Target: 5'- cGCGgcaGUGGCGCgcgacggUCACCACG-CGCCGu -3' miRNA: 3'- -CGCac-CACCGCG-------GGUGGUGUgGCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 43967 | 0.68 | 0.475724 |
Target: 5'- cGCGauuaUGGauuacuuUGGCGCgCCGCCcaacGCGCgGCCGg -3' miRNA: 3'- -CGC----ACC-------ACCGCG-GGUGG----UGUGgCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 7867 | 0.68 | 0.5042 |
Target: 5'- aGCGcGGUGGCGCCCACguuUACCu--- -3' miRNA: 3'- -CGCaCCACCGCGGGUGgu-GUGGcggc -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 77374 | 0.67 | 0.513544 |
Target: 5'- cGCGcUGGUGcaaugcgcacGCGCCgGCCGCGUCGCUu -3' miRNA: 3'- -CGC-ACCAC----------CGCGGgUGGUGUGGCGGc -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 52988 | 0.67 | 0.513544 |
Target: 5'- --cUGGccgcaGGC-CCCGCCGCaACCGCCGc -3' miRNA: 3'- cgcACCa----CCGcGGGUGGUG-UGGCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 26560 | 0.67 | 0.532438 |
Target: 5'- aGCGUGGU-GCGCaCgGCCGCAUaguUGUCGu -3' miRNA: 3'- -CGCACCAcCGCG-GgUGGUGUG---GCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 31453 | 0.68 | 0.449828 |
Target: 5'- uGCGaucuuUGGacGCGCCCAauaC-CACCGCCGa -3' miRNA: 3'- -CGC-----ACCacCGCGGGUg--GuGUGGCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 27484 | 0.69 | 0.407083 |
Target: 5'- aCGUGccGUGG-GCCgACCACAUgGCCGu -3' miRNA: 3'- cGCAC--CACCgCGGgUGGUGUGgCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 4531 | 0.7 | 0.377928 |
Target: 5'- cGCGUGGuguUcguuaaaucuaucacGGCGCCCAgCGCGCUguGCCGc -3' miRNA: 3'- -CGCACC---A---------------CCGCGGGUgGUGUGG--CGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 120969 | 0.73 | 0.257701 |
Target: 5'- cGCG-GGccGCGCCCGCUgccccgGCGCCGCCu -3' miRNA: 3'- -CGCaCCacCGCGGGUGG------UGUGGCGGc -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 36466 | 0.72 | 0.263676 |
Target: 5'- gGUGUGGUGG-GCgCCACCACGCgcuugGCCu -3' miRNA: 3'- -CGCACCACCgCG-GGUGGUGUGg----CGGc -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 65281 | 0.72 | 0.275962 |
Target: 5'- aCGUGaUGGaCGCCCACCGCGCCaaCGu -3' miRNA: 3'- cGCACcACC-GCGGGUGGUGUGGcgGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 11992 | 0.72 | 0.301898 |
Target: 5'- aCGUGGcaGGC-CgCUGCCGCGCCGCCGc -3' miRNA: 3'- cGCACCa-CCGcG-GGUGGUGUGGCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 104018 | 0.71 | 0.315554 |
Target: 5'- cGCGUGuUGGgGUCCAgCGaGCCGCCGu -3' miRNA: 3'- -CGCACcACCgCGGGUgGUgUGGCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 80417 | 0.71 | 0.344251 |
Target: 5'- cGCGUcaaaGUacGGCGCCaGCCGCACCGCgCGc -3' miRNA: 3'- -CGCAc---CA--CCGCGGgUGGUGUGGCG-GC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 97397 | 0.7 | 0.366976 |
Target: 5'- cGUGUGGcGGCGCgCAaggaaGCCGCCGg -3' miRNA: 3'- -CGCACCaCCGCGgGUggug-UGGCGGC- -5' |
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21210 | 3' | -62.5 | NC_004778.3 | + | 82265 | 0.7 | 0.374777 |
Target: 5'- aGCGUGGUGcGUuugucgcgGCCCACCGuuUCGCCc -3' miRNA: 3'- -CGCACCAC-CG--------CGGGUGGUguGGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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