miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21211 5' -47.6 NC_004778.3 + 40822 0.67 0.997823
Target:  5'- -aGACGCGCAGAcgcUGCUGcACAUUGc- -3'
miRNA:   3'- ggCUGCGCGUUUa--ACGGU-UGUAACuu -5'
21211 5' -47.6 NC_004778.3 + 42226 0.69 0.987756
Target:  5'- gCUGGCGgGCAAAagUGUCGACAUcGAc -3'
miRNA:   3'- -GGCUGCgCGUUUa-ACGGUUGUAaCUu -5'
21211 5' -47.6 NC_004778.3 + 43291 0.68 0.995638
Target:  5'- cUCGAuuUGCGCAAAcgGCCcgugcGCGUUGAAc -3'
miRNA:   3'- -GGCU--GCGCGUUUaaCGGu----UGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 43324 0.66 0.999006
Target:  5'- cUCGGCGCGCA---UGCgGACAa---- -3'
miRNA:   3'- -GGCUGCGCGUuuaACGgUUGUaacuu -5'
21211 5' -47.6 NC_004778.3 + 43855 0.73 0.928633
Target:  5'- uCCGACGCgGCAAcaggUGCCGGCucgGGAg -3'
miRNA:   3'- -GGCUGCG-CGUUua--ACGGUUGuaaCUU- -5'
21211 5' -47.6 NC_004778.3 + 45597 0.66 0.999086
Target:  5'- cCUGGCGCGCcuucuGcauagccgcgcccucGUcGCCGGCGUUGAGu -3'
miRNA:   3'- -GGCUGCGCGu----U---------------UAaCGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 46990 0.66 0.999006
Target:  5'- gCCGACGCGCuug-UGCgAAuCAUcGAc -3'
miRNA:   3'- -GGCUGCGCGuuuaACGgUU-GUAaCUu -5'
21211 5' -47.6 NC_004778.3 + 52834 0.69 0.990682
Target:  5'- cCCGACGC-CA---UGCCGGCGcUGAu -3'
miRNA:   3'- -GGCUGCGcGUuuaACGGUUGUaACUu -5'
21211 5' -47.6 NC_004778.3 + 53817 0.68 0.996305
Target:  5'- -gGACGCGCGAGUgcgGCuCAACGa---- -3'
miRNA:   3'- ggCUGCGCGUUUAa--CG-GUUGUaacuu -5'
21211 5' -47.6 NC_004778.3 + 54089 0.72 0.957668
Target:  5'- gCGACGCGguccCAAAgcGCCGACAaUGAAc -3'
miRNA:   3'- gGCUGCGC----GUUUaaCGGUUGUaACUU- -5'
21211 5' -47.6 NC_004778.3 + 58686 0.66 0.999006
Target:  5'- uUGGCGCGCA--UUGCCAAUu----- -3'
miRNA:   3'- gGCUGCGCGUuuAACGGUUGuaacuu -5'
21211 5' -47.6 NC_004778.3 + 61292 0.66 0.999006
Target:  5'- aCGAUGCGCcguc-GCCGACGUgcGAGa -3'
miRNA:   3'- gGCUGCGCGuuuaaCGGUUGUAa-CUU- -5'
21211 5' -47.6 NC_004778.3 + 62379 0.67 0.998195
Target:  5'- uCCGAUGCGCG---UGCCGAaaguaUGAu -3'
miRNA:   3'- -GGCUGCGCGUuuaACGGUUgua--ACUu -5'
21211 5' -47.6 NC_004778.3 + 63328 0.67 0.998195
Target:  5'- uUGcUGUGCGAcUUGUCGGCGUUGAAc -3'
miRNA:   3'- gGCuGCGCGUUuAACGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 65262 0.7 0.982096
Target:  5'- uUCGGCGCGC-AAUUGUaCGACGUgaUGGAc -3'
miRNA:   3'- -GGCUGCGCGuUUAACG-GUUGUA--ACUU- -5'
21211 5' -47.6 NC_004778.3 + 79365 0.66 0.999195
Target:  5'- aUCGAuCGCGCGGucugUGCCAAUAa---- -3'
miRNA:   3'- -GGCU-GCGCGUUua--ACGGUUGUaacuu -5'
21211 5' -47.6 NC_004778.3 + 83965 0.68 0.996243
Target:  5'- aCGGucCGCGCGAGUUGCCcgaccgcGGCAgcGAGu -3'
miRNA:   3'- gGCU--GCGCGUUUAACGG-------UUGUaaCUU- -5'
21211 5' -47.6 NC_004778.3 + 85938 0.66 0.99878
Target:  5'- cCUGACGCaGCGAAUuuUGUCAAUuuguugcgccgGUUGAAc -3'
miRNA:   3'- -GGCUGCG-CGUUUA--ACGGUUG-----------UAACUU- -5'
21211 5' -47.6 NC_004778.3 + 88389 0.66 0.999195
Target:  5'- -gGACGCGCGAc-UGCgAGCggUGGAc -3'
miRNA:   3'- ggCUGCGCGUUuaACGgUUGuaACUU- -5'
21211 5' -47.6 NC_004778.3 + 89337 0.68 0.994009
Target:  5'- uCCGugG-GCcGAUUGCCGACGUc--- -3'
miRNA:   3'- -GGCugCgCGuUUAACGGUUGUAacuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.