Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21211 | 5' | -47.6 | NC_004778.3 | + | 2283 | 0.67 | 0.996886 |
Target: 5'- gCGACGCGCuc-UUGgCAGCAUgcaUGGu -3' miRNA: 3'- gGCUGCGCGuuuAACgGUUGUA---ACUu -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 2382 | 0.66 | 0.99878 |
Target: 5'- gCCGAaacuucCGCGCGGug-GCCGACGUg--- -3' miRNA: 3'- -GGCU------GCGCGUUuaaCGGUUGUAacuu -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 7547 | 0.77 | 0.743811 |
Target: 5'- aCGGCGCGCGAAUuugcuUGCUGGCGUUGc- -3' miRNA: 3'- gGCUGCGCGUUUA-----ACGGUUGUAACuu -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 8028 | 0.67 | 0.998625 |
Target: 5'- gCCGACGCGUgccugcugcucagccGcAcgUGCCAGCG-UGAc -3' miRNA: 3'- -GGCUGCGCG---------------U-UuaACGGUUGUaACUu -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 9487 | 0.67 | 0.99739 |
Target: 5'- uUGGCGaGguGAUUGCCGACGcgGAGg -3' miRNA: 3'- gGCUGCgCguUUAACGGUUGUaaCUU- -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 10067 | 0.67 | 0.998512 |
Target: 5'- uCCGACGCaGUAAAcugcGCCAGCucacuAUUGAc -3' miRNA: 3'- -GGCUGCG-CGUUUaa--CGGUUG-----UAACUu -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 14550 | 0.68 | 0.994876 |
Target: 5'- aCGAcCGCGCGuccAUgugcGCCAGCAUUGu- -3' miRNA: 3'- gGCU-GCGCGUu--UAa---CGGUUGUAACuu -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 15563 | 0.71 | 0.968599 |
Target: 5'- cCCGACGCGCccg--GCCAuu-UUGAAu -3' miRNA: 3'- -GGCUGCGCGuuuaaCGGUuguAACUU- -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 17114 | 0.66 | 0.999353 |
Target: 5'- gCGGCGCGCcuaccguggcAAcgccGUUGCCAGCGacacguucUUGGAg -3' miRNA: 3'- gGCUGCGCG----------UU----UAACGGUUGU--------AACUU- -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 19125 | 0.69 | 0.98915 |
Target: 5'- uCgGGCGCGCGAGcgGCgcuguuucgaacaCGACAUUGGAg -3' miRNA: 3'- -GgCUGCGCGUUUaaCG-------------GUUGUAACUU- -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 21082 | 0.69 | 0.989297 |
Target: 5'- gCGugGCGUAGcUUGCCA-CGuUUGAAu -3' miRNA: 3'- gGCugCGCGUUuAACGGUuGU-AACUU- -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 21615 | 0.68 | 0.994009 |
Target: 5'- aUCGGCaaaCAAAUUGUCGACGUUGAAc -3' miRNA: 3'- -GGCUGcgcGUUUAACGGUUGUAACUU- -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 22501 | 0.68 | 0.993434 |
Target: 5'- gCCGACGCGU---UUGCCAuauuugcccgaggccGCcUUGAAu -3' miRNA: 3'- -GGCUGCGCGuuuAACGGU---------------UGuAACUU- -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 23536 | 0.76 | 0.817581 |
Target: 5'- gCCGGCGCGCAAGUauaUGCCgcagucguagcgauuGugGUUGAc -3' miRNA: 3'- -GGCUGCGCGUUUA---ACGG---------------UugUAACUu -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 27033 | 0.66 | 0.999195 |
Target: 5'- uCCGACGCGUcuAUUG-CGACGggaaUUGGg -3' miRNA: 3'- -GGCUGCGCGuuUAACgGUUGU----AACUu -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 29714 | 0.81 | 0.558056 |
Target: 5'- aCGGCGCGCucauGUUGCCAACGUggccGAAa -3' miRNA: 3'- gGCUGCGCGuu--UAACGGUUGUAa---CUU- -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 34942 | 0.68 | 0.993028 |
Target: 5'- gCGGCGuCGUuauugUGCCAACGUUGc- -3' miRNA: 3'- gGCUGC-GCGuuua-ACGGUUGUAACuu -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 39432 | 0.71 | 0.971749 |
Target: 5'- aCCGGCGcCGCu--UUGCCGACuAUUGc- -3' miRNA: 3'- -GGCUGC-GCGuuuAACGGUUG-UAACuu -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 39804 | 0.68 | 0.995638 |
Target: 5'- uUGcACGCGCcGAUUGUCGGCGcgUGGAa -3' miRNA: 3'- gGC-UGCGCGuUUAACGGUUGUa-ACUU- -5' |
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21211 | 5' | -47.6 | NC_004778.3 | + | 40444 | 0.67 | 0.997823 |
Target: 5'- gCCGGCGUGCAAAcUGCuCAugAa---- -3' miRNA: 3'- -GGCUGCGCGUUUaACG-GUugUaacuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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