miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21211 5' -47.6 NC_004778.3 + 100866 0.67 0.998195
Target:  5'- uUGAgGUGCGGAUUGgCCAGC-UUGGc -3'
miRNA:   3'- gGCUgCGCGUUUAAC-GGUUGuAACUu -5'
21211 5' -47.6 NC_004778.3 + 21615 0.68 0.994009
Target:  5'- aUCGGCaaaCAAAUUGUCGACGUUGAAc -3'
miRNA:   3'- -GGCUGcgcGUUUAACGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 89337 0.68 0.994009
Target:  5'- uCCGugG-GCcGAUUGCCGACGUc--- -3'
miRNA:   3'- -GGCugCgCGuUUAACGGUUGUAacuu -5'
21211 5' -47.6 NC_004778.3 + 14550 0.68 0.994876
Target:  5'- aCGAcCGCGCGuccAUgugcGCCAGCAUUGu- -3'
miRNA:   3'- gGCU-GCGCGUu--UAa---CGGUUGUAACuu -5'
21211 5' -47.6 NC_004778.3 + 39804 0.68 0.995638
Target:  5'- uUGcACGCGCcGAUUGUCGGCGcgUGGAa -3'
miRNA:   3'- gGC-UGCGCGuUUAACGGUUGUa-ACUU- -5'
21211 5' -47.6 NC_004778.3 + 2283 0.67 0.996886
Target:  5'- gCGACGCGCuc-UUGgCAGCAUgcaUGGu -3'
miRNA:   3'- gGCUGCGCGuuuAACgGUUGUA---ACUu -5'
21211 5' -47.6 NC_004778.3 + 9487 0.67 0.99739
Target:  5'- uUGGCGaGguGAUUGCCGACGcgGAGg -3'
miRNA:   3'- gGCUGCgCguUUAACGGUUGUaaCUU- -5'
21211 5' -47.6 NC_004778.3 + 125837 0.67 0.99739
Target:  5'- aCgGACGUGCcuguUUGCCAGCAauuuugUGAc -3'
miRNA:   3'- -GgCUGCGCGuuu-AACGGUUGUa-----ACUu -5'
21211 5' -47.6 NC_004778.3 + 63328 0.67 0.998195
Target:  5'- uUGcUGUGCGAcUUGUCGGCGUUGAAc -3'
miRNA:   3'- gGCuGCGCGUUuAACGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 34942 0.68 0.993028
Target:  5'- gCGGCGuCGUuauugUGCCAACGUUGc- -3'
miRNA:   3'- gGCUGC-GCGuuua-ACGGUUGUAACuu -5'
21211 5' -47.6 NC_004778.3 + 52834 0.69 0.990682
Target:  5'- cCCGACGC-CA---UGCCGGCGcUGAu -3'
miRNA:   3'- -GGCUGCGcGUuuaACGGUUGUaACUu -5'
21211 5' -47.6 NC_004778.3 + 19125 0.69 0.98915
Target:  5'- uCgGGCGCGCGAGcgGCgcuguuucgaacaCGACAUUGGAg -3'
miRNA:   3'- -GgCUGCGCGUUUaaCG-------------GUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 7547 0.77 0.743811
Target:  5'- aCGGCGCGCGAAUuugcuUGCUGGCGUUGc- -3'
miRNA:   3'- gGCUGCGCGUUUA-----ACGGUUGUAACuu -5'
21211 5' -47.6 NC_004778.3 + 93411 0.77 0.774735
Target:  5'- gCCGACGCcgguggaaaaGCuAAUcGCCAGCAUUGAAa -3'
miRNA:   3'- -GGCUGCG----------CGuUUAaCGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 23536 0.76 0.817581
Target:  5'- gCCGGCGCGCAAGUauaUGCCgcagucguagcgauuGugGUUGAc -3'
miRNA:   3'- -GGCUGCGCGUUUA---ACGG---------------UugUAACUu -5'
21211 5' -47.6 NC_004778.3 + 114936 0.75 0.856623
Target:  5'- gCCGGCGUGCGcaccgcggccuUUGCCAugAUUGAc -3'
miRNA:   3'- -GGCUGCGCGUuu---------AACGGUugUAACUu -5'
21211 5' -47.6 NC_004778.3 + 43855 0.73 0.928633
Target:  5'- uCCGACGCgGCAAcaggUGCCGGCucgGGAg -3'
miRNA:   3'- -GGCUGCG-CGUUua--ACGGUUGuaaCUU- -5'
21211 5' -47.6 NC_004778.3 + 54089 0.72 0.957668
Target:  5'- gCGACGCGguccCAAAgcGCCGACAaUGAAc -3'
miRNA:   3'- gGCUGCGC----GUUUaaCGGUUGUaACUU- -5'
21211 5' -47.6 NC_004778.3 + 39432 0.71 0.971749
Target:  5'- aCCGGCGcCGCu--UUGCCGACuAUUGc- -3'
miRNA:   3'- -GGCUGC-GCGuuuAACGGUUG-UAACuu -5'
21211 5' -47.6 NC_004778.3 + 65262 0.7 0.982096
Target:  5'- uUCGGCGCGC-AAUUGUaCGACGUgaUGGAc -3'
miRNA:   3'- -GGCUGCGCGuUUAACG-GUUGUA--ACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.