miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21211 5' -47.6 NC_004778.3 + 91682 1.09 0.013962
Target:  5'- gCCGACGCGCAAAUUGCCAACAUUGAAa -3'
miRNA:   3'- -GGCUGCGCGUUUAACGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 29714 0.81 0.558056
Target:  5'- aCGGCGCGCucauGUUGCCAACGUggccGAAa -3'
miRNA:   3'- gGCUGCGCGuu--UAACGGUUGUAa---CUU- -5'
21211 5' -47.6 NC_004778.3 + 7547 0.77 0.743811
Target:  5'- aCGGCGCGCGAAUuugcuUGCUGGCGUUGc- -3'
miRNA:   3'- gGCUGCGCGUUUA-----ACGGUUGUAACuu -5'
21211 5' -47.6 NC_004778.3 + 93411 0.77 0.774735
Target:  5'- gCCGACGCcgguggaaaaGCuAAUcGCCAGCAUUGAAa -3'
miRNA:   3'- -GGCUGCG----------CGuUUAaCGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 23536 0.76 0.817581
Target:  5'- gCCGGCGCGCAAGUauaUGCCgcagucguagcgauuGugGUUGAc -3'
miRNA:   3'- -GGCUGCGCGUUUA---ACGG---------------UugUAACUu -5'
21211 5' -47.6 NC_004778.3 + 114936 0.75 0.856623
Target:  5'- gCCGGCGUGCGcaccgcggccuUUGCCAugAUUGAc -3'
miRNA:   3'- -GGCUGCGCGUuu---------AACGGUugUAACUu -5'
21211 5' -47.6 NC_004778.3 + 96276 0.75 0.858294
Target:  5'- cCCGucaGCGUGCAAGUUGCCGAUGUa--- -3'
miRNA:   3'- -GGC---UGCGCGUUUAACGGUUGUAacuu -5'
21211 5' -47.6 NC_004778.3 + 119575 0.73 0.916737
Target:  5'- gCGGCGCGUAAGgaGCCAAUAUuUGGg -3'
miRNA:   3'- gGCUGCGCGUUUaaCGGUUGUA-ACUu -5'
21211 5' -47.6 NC_004778.3 + 121479 0.73 0.928633
Target:  5'- gCGACGUGCAcg-UGCUAcCAUUGGAc -3'
miRNA:   3'- gGCUGCGCGUuuaACGGUuGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 43855 0.73 0.928633
Target:  5'- uCCGACGCgGCAAcaggUGCCGGCucgGGAg -3'
miRNA:   3'- -GGCUGCG-CGUUua--ACGGUUGuaaCUU- -5'
21211 5' -47.6 NC_004778.3 + 107156 0.72 0.949082
Target:  5'- gCgGGCGCGCAAAUUGCCcACu----- -3'
miRNA:   3'- -GgCUGCGCGUUUAACGGuUGuaacuu -5'
21211 5' -47.6 NC_004778.3 + 54089 0.72 0.957668
Target:  5'- gCGACGCGguccCAAAgcGCCGACAaUGAAc -3'
miRNA:   3'- gGCUGCGC----GUUUaaCGGUUGUaACUU- -5'
21211 5' -47.6 NC_004778.3 + 94994 0.71 0.961565
Target:  5'- cUCGACGCGCAGcgUGCCcguguACAg---- -3'
miRNA:   3'- -GGCUGCGCGUUuaACGGu----UGUaacuu -5'
21211 5' -47.6 NC_004778.3 + 15563 0.71 0.968599
Target:  5'- cCCGACGCGCccg--GCCAuu-UUGAAu -3'
miRNA:   3'- -GGCUGCGCGuuuaaCGGUuguAACUU- -5'
21211 5' -47.6 NC_004778.3 + 39432 0.71 0.971749
Target:  5'- aCCGGCGcCGCu--UUGCCGACuAUUGc- -3'
miRNA:   3'- -GGCUGC-GCGuuuAACGGUUG-UAACuu -5'
21211 5' -47.6 NC_004778.3 + 113373 0.71 0.974665
Target:  5'- gCGACGCGCGGGcUUGCCgGACAc---- -3'
miRNA:   3'- gGCUGCGCGUUU-AACGG-UUGUaacuu -5'
21211 5' -47.6 NC_004778.3 + 119918 0.7 0.979829
Target:  5'- aCGGCGCGCAAAUcGUCGAUAc---- -3'
miRNA:   3'- gGCUGCGCGUUUAaCGGUUGUaacuu -5'
21211 5' -47.6 NC_004778.3 + 65262 0.7 0.982096
Target:  5'- uUCGGCGCGC-AAUUGUaCGACGUgaUGGAc -3'
miRNA:   3'- -GGCUGCGCGuUUAACG-GUUGUA--ACUU- -5'
21211 5' -47.6 NC_004778.3 + 42226 0.69 0.987756
Target:  5'- gCUGGCGgGCAAAagUGUCGACAUcGAc -3'
miRNA:   3'- -GGCUGCgCGUUUa-ACGGUUGUAaCUu -5'
21211 5' -47.6 NC_004778.3 + 19125 0.69 0.98915
Target:  5'- uCgGGCGCGCGAGcgGCgcuguuucgaacaCGACAUUGGAg -3'
miRNA:   3'- -GgCUGCGCGUUUaaCG-------------GUUGUAACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.