Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21212 | 3' | -55.7 | NC_004778.3 | + | 90895 | 1.06 | 0.003932 |
Target: 5'- uACGCCACGUUCGACUGCGACGCCAAAg -3' miRNA: 3'- -UGCGGUGCAAGCUGACGCUGCGGUUU- -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 85595 | 0.8 | 0.204058 |
Target: 5'- gACGCCACGUgCGACcGCuGACGCCAu- -3' miRNA: 3'- -UGCGGUGCAaGCUGaCG-CUGCGGUuu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 67799 | 0.74 | 0.450702 |
Target: 5'- cGCGCgGCGUUggcgcgcgcUGGCUGCGcgGCGCCAAAc -3' miRNA: 3'- -UGCGgUGCAA---------GCUGACGC--UGCGGUUU- -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 47527 | 0.74 | 0.460096 |
Target: 5'- gGCGCCAacacCGACUGCGACGgCGAc -3' miRNA: 3'- -UGCGGUgcaaGCUGACGCUGCgGUUu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 49084 | 0.73 | 0.498662 |
Target: 5'- -gGCUGCGUUCG-CUGCGACGaCAGAc -3' miRNA: 3'- ugCGGUGCAAGCuGACGCUGCgGUUU- -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 88383 | 0.73 | 0.498662 |
Target: 5'- cGCGCUggACGcgCGACUGCGAgcgguggaCGCCGAGu -3' miRNA: 3'- -UGCGG--UGCaaGCUGACGCU--------GCGGUUU- -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 120707 | 0.72 | 0.558986 |
Target: 5'- cGCGCCACGg-CGcCgGCGGCGUCAAAg -3' miRNA: 3'- -UGCGGUGCaaGCuGaCGCUGCGGUUU- -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 46795 | 0.72 | 0.56926 |
Target: 5'- aGCGCCAaGUccgcuuuggUCGACaUGCGACGCUAu- -3' miRNA: 3'- -UGCGGUgCA---------AGCUG-ACGCUGCGGUuu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 61341 | 0.7 | 0.642059 |
Target: 5'- uACGCCGCagGUUCGGCUucaugugcgGaCGGCGCCGGc -3' miRNA: 3'- -UGCGGUG--CAAGCUGA---------C-GCUGCGGUUu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 99979 | 0.7 | 0.693965 |
Target: 5'- cACGCCACGcugUCGccauAUUGCGuauACGCCAGc -3' miRNA: 3'- -UGCGGUGCa--AGC----UGACGC---UGCGGUUu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 61954 | 0.69 | 0.72151 |
Target: 5'- aACGCCGCGUUCucgaacaugucggGGCgcuugccgcugcGCGugGCCAAu -3' miRNA: 3'- -UGCGGUGCAAG-------------CUGa-----------CGCugCGGUUu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 21094 | 0.69 | 0.724538 |
Target: 5'- uUGCCACGUUUGaAUUGUGcACGCCc-- -3' miRNA: 3'- uGCGGUGCAAGC-UGACGC-UGCGGuuu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 38878 | 0.69 | 0.724538 |
Target: 5'- gGCGCUGCGcUCGGCgGCGAgcgcUGCCAc- -3' miRNA: 3'- -UGCGGUGCaAGCUGaCGCU----GCGGUuu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 33358 | 0.69 | 0.724538 |
Target: 5'- uCGCCGCGggCGACgucGCGgacgacGCGCCGu- -3' miRNA: 3'- uGCGGUGCaaGCUGa--CGC------UGCGGUuu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 88238 | 0.69 | 0.734576 |
Target: 5'- cGCGaaaCCACGUgCGACgGUGugGCCAu- -3' miRNA: 3'- -UGC---GGUGCAaGCUGaCGCugCGGUuu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 118733 | 0.69 | 0.734576 |
Target: 5'- uGCGCUugGccUCGGCgcgGCGGCGCaCAc- -3' miRNA: 3'- -UGCGGugCa-AGCUGa--CGCUGCG-GUuu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 98186 | 0.69 | 0.744521 |
Target: 5'- -gGCCACGa--GGCacaccgGCGACGCCAAc -3' miRNA: 3'- ugCGGUGCaagCUGa-----CGCUGCGGUUu -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 37909 | 0.69 | 0.744521 |
Target: 5'- aACGUCAaug-CGcAUUGCGGCGCCAAAu -3' miRNA: 3'- -UGCGGUgcaaGC-UGACGCUGCGGUUU- -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 17176 | 0.69 | 0.744521 |
Target: 5'- cGCGCgggCACcg-CGACUGCacgGACGCCAAAa -3' miRNA: 3'- -UGCG---GUGcaaGCUGACG---CUGCGGUUU- -5' |
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21212 | 3' | -55.7 | NC_004778.3 | + | 114011 | 0.68 | 0.754364 |
Target: 5'- gGCGCUGCGagcagugcUUUGAUaucgGCGGCGCCAAc -3' miRNA: 3'- -UGCGGUGC--------AAGCUGa---CGCUGCGGUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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