miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21212 3' -55.7 NC_004778.3 + 27678 0.66 0.883409
Target:  5'- uACGCUuCGggcaCGACgaGCGugGCCAGu -3'
miRNA:   3'- -UGCGGuGCaa--GCUGa-CGCugCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 64456 0.68 0.801703
Target:  5'- aACuaCACGUUCGACgccgaggccgGCGAaUGCCGAGu -3'
miRNA:   3'- -UGcgGUGCAAGCUGa---------CGCU-GCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 113892 0.67 0.810729
Target:  5'- gGCGCguCGggCGAagGCGGCGCCGc- -3'
miRNA:   3'- -UGCGguGCaaGCUgaCGCUGCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 83113 0.67 0.819586
Target:  5'- cGCGCCGCGaUCGACUGguuacccaaCGugGUgAGg -3'
miRNA:   3'- -UGCGGUGCaAGCUGAC---------GCugCGgUUu -5'
21212 3' -55.7 NC_004778.3 + 38296 0.66 0.85316
Target:  5'- uGCGCCAgCGcgcacgCGACcGCG-CGCCGAGc -3'
miRNA:   3'- -UGCGGU-GCaa----GCUGaCGCuGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 49329 0.66 0.85316
Target:  5'- gGCGCCGCacaaCGugUGCGGCaCCAc- -3'
miRNA:   3'- -UGCGGUGcaa-GCugACGCUGcGGUuu -5'
21212 3' -55.7 NC_004778.3 + 62022 0.66 0.861051
Target:  5'- gAUGUCuGCGgacgcCGAgaGCGGCGCCAAAa -3'
miRNA:   3'- -UGCGG-UGCaa---GCUgaCGCUGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 38078 0.66 0.868727
Target:  5'- aAUGCCGCug-CGGC-GCGACGCgCAAc -3'
miRNA:   3'- -UGCGGUGcaaGCUGaCGCUGCG-GUUu -5'
21212 3' -55.7 NC_004778.3 + 44316 0.66 0.868727
Target:  5'- cAUGCC-CGccagCGACgaGCGGCGCCGc- -3'
miRNA:   3'- -UGCGGuGCaa--GCUGa-CGCUGCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 32679 0.68 0.792518
Target:  5'- cGCGCCGCGgca-GCUGCGcgucuACGCCGc- -3'
miRNA:   3'- -UGCGGUGCaagcUGACGC-----UGCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 47958 0.68 0.764096
Target:  5'- aGCGCCGCuuuGUUCGAaaGCacGCGCCAGu -3'
miRNA:   3'- -UGCGGUG---CAAGCUgaCGc-UGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 98186 0.69 0.744521
Target:  5'- -gGCCACGa--GGCacaccgGCGACGCCAAc -3'
miRNA:   3'- ugCGGUGCaagCUGa-----CGCUGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 47527 0.74 0.460096
Target:  5'- gGCGCCAacacCGACUGCGACGgCGAc -3'
miRNA:   3'- -UGCGGUgcaaGCUGACGCUGCgGUUu -5'
21212 3' -55.7 NC_004778.3 + 61341 0.7 0.642059
Target:  5'- uACGCCGCagGUUCGGCUucaugugcgGaCGGCGCCGGc -3'
miRNA:   3'- -UGCGGUG--CAAGCUGA---------C-GCUGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 61954 0.69 0.72151
Target:  5'- aACGCCGCGUUCucgaacaugucggGGCgcuugccgcugcGCGugGCCAAu -3'
miRNA:   3'- -UGCGGUGCAAG-------------CUGa-----------CGCugCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 33358 0.69 0.724538
Target:  5'- uCGCCGCGggCGACgucGCGgacgacGCGCCGu- -3'
miRNA:   3'- uGCGGUGCaaGCUGa--CGC------UGCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 118733 0.69 0.734576
Target:  5'- uGCGCUugGccUCGGCgcgGCGGCGCaCAc- -3'
miRNA:   3'- -UGCGGugCa-AGCUGa--CGCUGCG-GUuu -5'
21212 3' -55.7 NC_004778.3 + 88238 0.69 0.734576
Target:  5'- cGCGaaaCCACGUgCGACgGUGugGCCAu- -3'
miRNA:   3'- -UGC---GGUGCAaGCUGaCGCugCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 17176 0.69 0.744521
Target:  5'- cGCGCgggCACcg-CGACUGCacgGACGCCAAAa -3'
miRNA:   3'- -UGCG---GUGcaaGCUGACG---CUGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 37909 0.69 0.744521
Target:  5'- aACGUCAaug-CGcAUUGCGGCGCCAAAu -3'
miRNA:   3'- -UGCGGUgcaaGC-UGACGCUGCGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.