miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21215 3' -57.7 NC_004778.3 + 11632 0.68 0.725552
Target:  5'- -----uCGUcGCuGGUGCGCCGCuuGCGCu -3'
miRNA:   3'- guuuuuGCA-CG-CCGCGCGGCGc-CGCG- -5'
21215 3' -57.7 NC_004778.3 + 14131 0.7 0.594191
Target:  5'- ---cAAUGUGCGGcCG-GCCGCcucaauuuuuucGGCGCa -3'
miRNA:   3'- guuuUUGCACGCC-GCgCGGCG------------CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 14338 0.67 0.734369
Target:  5'- gGAGGACGgcucgagGCGGUucgaaauGCGCUGCaacGCGCg -3'
miRNA:   3'- gUUUUUGCa------CGCCG-------CGCGGCGc--CGCG- -5'
21215 3' -57.7 NC_004778.3 + 14504 0.7 0.594191
Target:  5'- gCAAAGGCc-GCGGUGCGCaCGcCGGCuuGCg -3'
miRNA:   3'- -GUUUUUGcaCGCCGCGCG-GC-GCCG--CG- -5'
21215 3' -57.7 NC_004778.3 + 15073 0.67 0.754652
Target:  5'- gCAAGGGC---CGGCcuCGcCCGCGGCGCg -3'
miRNA:   3'- -GUUUUUGcacGCCGc-GC-GGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 15117 0.67 0.754652
Target:  5'- aCAAAAGCGaGCaGGCGCa-CGCGGC-Ca -3'
miRNA:   3'- -GUUUUUGCaCG-CCGCGcgGCGCCGcG- -5'
21215 3' -57.7 NC_004778.3 + 15685 0.8 0.173929
Target:  5'- cCAAcAACGUGCucgacgauGGCGCGCUGCuGCGCg -3'
miRNA:   3'- -GUUuUUGCACG--------CCGCGCGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 17092 0.74 0.379241
Target:  5'- aCAAGGcCGUGuuGCuGUGCgCGCGGCGCg -3'
miRNA:   3'- -GUUUUuGCACgcCG-CGCG-GCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 17340 0.71 0.534073
Target:  5'- ------gGUGUGGUGCGCgG-GGCGCu -3'
miRNA:   3'- guuuuugCACGCCGCGCGgCgCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 17846 0.67 0.744081
Target:  5'- ---cGGCGcGCGuaacaccGCGCGCCGUccgugacuuuGGCGCg -3'
miRNA:   3'- guuuUUGCaCGC-------CGCGCGGCG----------CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 18078 0.66 0.791909
Target:  5'- ----cGCGUGaCGGUGCGCCuuuugGGCGa -3'
miRNA:   3'- guuuuUGCAC-GCCGCGCGGcg---CCGCg -5'
21215 3' -57.7 NC_004778.3 + 19114 0.69 0.634903
Target:  5'- gCAAAGcUG-GUucgGGCGCGCgaGCGGCGCu -3'
miRNA:   3'- -GUUUUuGCaCG---CCGCGCGg-CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 19367 0.66 0.835208
Target:  5'- aCAAAcGCGUGCccggaaaccuGGUcCGCC-UGGCGCa -3'
miRNA:   3'- -GUUUuUGCACG----------CCGcGCGGcGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 21046 0.71 0.528168
Target:  5'- gCAAAAGCGUGguCGGCgGCGUuuugugcaaacgaugCGUGGCGUa -3'
miRNA:   3'- -GUUUUUGCAC--GCCG-CGCG---------------GCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 21086 0.67 0.745047
Target:  5'- --cAGGCGUcagcGCGGUGCaGcCCGCGGaGCg -3'
miRNA:   3'- guuUUUGCA----CGCCGCG-C-GGCGCCgCG- -5'
21215 3' -57.7 NC_004778.3 + 23144 0.69 0.634903
Target:  5'- -uGGGGC-UGCGGCGgGCaCG-GGCGCu -3'
miRNA:   3'- guUUUUGcACGCCGCgCG-GCgCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 24285 0.79 0.187498
Target:  5'- -uGAAACGgaGCcaacaaGCGCGCCGCGGCGCc -3'
miRNA:   3'- guUUUUGCa-CGc-----CGCGCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 24394 0.67 0.734369
Target:  5'- --cGAACGUGC-GCGUGUCGagugaauCGGUGCu -3'
miRNA:   3'- guuUUUGCACGcCGCGCGGC-------GCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 25140 0.67 0.786453
Target:  5'- ----cACGUucuuGCGGCGCGUgcaaaccugcacguuCuuGCGGCGCa -3'
miRNA:   3'- guuuuUGCA----CGCCGCGCG---------------G--CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 25650 0.66 0.818384
Target:  5'- --cAAGCuUGCGcGgGgGCCgGCGGCGUg -3'
miRNA:   3'- guuUUUGcACGC-CgCgCGG-CGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.