miRNA display CGI


Results 1 - 20 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21215 3' -57.7 NC_004778.3 + 132 0.89 0.044219
Target:  5'- gAAAAAC-UGCGGCGCGuCCGCGGCGUa -3'
miRNA:   3'- gUUUUUGcACGCCGCGC-GGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 1271 0.69 0.645094
Target:  5'- uGGGGACGacgGCGGCGUGUacguuUGUGGCGa -3'
miRNA:   3'- gUUUUUGCa--CGCCGCGCG-----GCGCCGCg -5'
21215 3' -57.7 NC_004778.3 + 1683 0.67 0.745047
Target:  5'- ------gGUGCGGCcagcaGCGCgaGCaGGCGCa -3'
miRNA:   3'- guuuuugCACGCCG-----CGCGg-CG-CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 1979 0.72 0.485681
Target:  5'- ----cGCGUGCacagcucGUGcCGCUGCGGCGCa -3'
miRNA:   3'- guuuuUGCACGc------CGC-GCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 4861 0.7 0.56392
Target:  5'- gCAAAAAaguUGCGcGCGCGCCuacgugacuCGGCGCg -3'
miRNA:   3'- -GUUUUUgc-ACGC-CGCGCGGc--------GCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 5060 0.69 0.655276
Target:  5'- ----cGCGacugGCGGCGUGguauaaCCGCGGCGa -3'
miRNA:   3'- guuuuUGCa---CGCCGCGC------GGCGCCGCg -5'
21215 3' -57.7 NC_004778.3 + 6853 0.66 0.791909
Target:  5'- --uGGACGcagGCGGCGCGuuGaucuuugaauCGaGCGCg -3'
miRNA:   3'- guuUUUGCa--CGCCGCGCggC----------GC-CGCG- -5'
21215 3' -57.7 NC_004778.3 + 7155 0.7 0.573972
Target:  5'- ---cGGCGgGCGGCGCGCCgagcacuaGCucguugagguGGCGCa -3'
miRNA:   3'- guuuUUGCaCGCCGCGCGG--------CG----------CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 7805 0.68 0.685676
Target:  5'- cCGAAaccAACGUGCGcuCG-GCCGaCGGCGUg -3'
miRNA:   3'- -GUUU---UUGCACGCc-GCgCGGC-GCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 7896 0.71 0.513516
Target:  5'- ---cGGCGUG-GGCGUguugcugGCCgGCGGCGCu -3'
miRNA:   3'- guuuUUGCACgCCGCG-------CGG-CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 7998 0.68 0.685676
Target:  5'- ----uAUGUGCGcG-GCGCCGaCGGCGg -3'
miRNA:   3'- guuuuUGCACGC-CgCGCGGC-GCCGCg -5'
21215 3' -57.7 NC_004778.3 + 8449 0.66 0.826884
Target:  5'- aCAGAuuCGUaauuaaagGCGGCGCcgggGCaGCGGgCGCg -3'
miRNA:   3'- -GUUUuuGCA--------CGCCGCG----CGgCGCC-GCG- -5'
21215 3' -57.7 NC_004778.3 + 8466 0.66 0.817525
Target:  5'- cCAGAAGCuaaugGCcgguucaGGCGCGUuccgcaagCGCGGCGUg -3'
miRNA:   3'- -GUUUUUGca---CG-------CCGCGCG--------GCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 8726 0.71 0.553916
Target:  5'- cCGAGAACuuugacGCcGCcgGCGCCGUGGCGCg -3'
miRNA:   3'- -GUUUUUGca----CGcCG--CGCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 8798 0.69 0.665438
Target:  5'- uCAGcgGCGagGCGGCGgGCgCGCucagcgaauGGCGCc -3'
miRNA:   3'- -GUUuuUGCa-CGCCGCgCG-GCG---------CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 8996 0.67 0.773531
Target:  5'- ---cAGCGUgcaauauuuggGCGGCGgGCUGCauuugucgcaGGCGCc -3'
miRNA:   3'- guuuUUGCA-----------CGCCGCgCGGCG----------CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 10250 0.68 0.675575
Target:  5'- ------aGUGCGcaGCGCGCCGauuGCGCg -3'
miRNA:   3'- guuuuugCACGC--CGCGCGGCgc-CGCG- -5'
21215 3' -57.7 NC_004778.3 + 10581 0.71 0.514487
Target:  5'- uCAGuuGCGUGC-GCGCGCCGUGucuguucCGCg -3'
miRNA:   3'- -GUUuuUGCACGcCGCGCGGCGCc------GCG- -5'
21215 3' -57.7 NC_004778.3 + 10694 0.68 0.675575
Target:  5'- ----cACGUGUugaGuGUGCGCCGCcGCGCc -3'
miRNA:   3'- guuuuUGCACG---C-CGCGCGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 10832 0.69 0.655276
Target:  5'- aAAAAGCGccUGgGGCGCGuuGCGaGgGUu -3'
miRNA:   3'- gUUUUUGC--ACgCCGCGCggCGC-CgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.