miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21215 3' -57.7 NC_004778.3 + 47723 0.71 0.504804
Target:  5'- uGAAAACGaUGCcgcuGGCGCaaGCCuuGUGGCGCa -3'
miRNA:   3'- gUUUUUGC-ACG----CCGCG--CGG--CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 70269 0.74 0.379241
Target:  5'- --uGGACG-GCGuGCGCgGCCGCGGCa- -3'
miRNA:   3'- guuUUUGCaCGC-CGCG-CGGCGCCGcg -5'
21215 3' -57.7 NC_004778.3 + 72465 0.73 0.400964
Target:  5'- aCAAAGugGUGCGGUuauauuugugccaaGUGCCGCcgucgguGGCGUu -3'
miRNA:   3'- -GUUUUugCACGCCG--------------CGCGGCG-------CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 105123 0.72 0.448519
Target:  5'- aCGAuuACGaugGCuacauagaauuGG-GCGCCGCGGCGCg -3'
miRNA:   3'- -GUUuuUGCa--CG-----------CCgCGCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 99025 0.72 0.457664
Target:  5'- ---cAACGccCGGCaacGCGUCGCGGCGCu -3'
miRNA:   3'- guuuUUGCacGCCG---CGCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 1979 0.72 0.485681
Target:  5'- ----cGCGUGCacagcucGUGcCGCUGCGGCGCa -3'
miRNA:   3'- guuuuUGCACGc------CGC-GCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 106451 0.72 0.485681
Target:  5'- ---cAACGcGCuGaGCGCGCUGCGcGCGCa -3'
miRNA:   3'- guuuUUGCaCG-C-CGCGCGGCGC-CGCG- -5'
21215 3' -57.7 NC_004778.3 + 118766 0.72 0.485681
Target:  5'- ----cACGUGCcacgcuucgGGCGCGgCGCGGCcgGCg -3'
miRNA:   3'- guuuuUGCACG---------CCGCGCgGCGCCG--CG- -5'
21215 3' -57.7 NC_004778.3 + 124062 0.72 0.4952
Target:  5'- gCAAGugcuCGUGCagaugcacGGCGCGCUGauGCGCg -3'
miRNA:   3'- -GUUUuu--GCACG--------CCGCGCGGCgcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 17092 0.74 0.379241
Target:  5'- aCAAGGcCGUGuuGCuGUGCgCGCGGCGCg -3'
miRNA:   3'- -GUUUUuGCACgcCG-CGCG-GCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 110100 0.74 0.371098
Target:  5'- -cAAAACG-GCGuGCGCGCCGa-GCGCu -3'
miRNA:   3'- guUUUUGCaCGC-CGCGCGGCgcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 25875 0.74 0.371098
Target:  5'- aGGGugUGUGcCGGCGCGaCCGUgGGCGCu -3'
miRNA:   3'- gUUUuuGCAC-GCCGCGC-GGCG-CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 112462 0.76 0.276381
Target:  5'- aUAAGGAUGUGCGGCagucgcucGCGCCaGCGGC-Cg -3'
miRNA:   3'- -GUUUUUGCACGCCG--------CGCGG-CGCCGcG- -5'
21215 3' -57.7 NC_004778.3 + 110002 0.75 0.317509
Target:  5'- --cGGugGUGaccacgguguuuCGGCGCGCCGaCGGCGUu -3'
miRNA:   3'- guuUUugCAC------------GCCGCGCGGC-GCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 108431 0.75 0.324795
Target:  5'- --uGGACGcGCuGGUGCGCCGCGG-GCu -3'
miRNA:   3'- guuUUUGCaCG-CCGCGCGGCGCCgCG- -5'
21215 3' -57.7 NC_004778.3 + 32445 0.75 0.339739
Target:  5'- gCAucAGCaUGCGGCGCaGCCGCuGCGUg -3'
miRNA:   3'- -GUuuUUGcACGCCGCG-CGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 95244 0.75 0.339739
Target:  5'- gCGGAcuCGgGCauGGUGCGCCGCGGCGa -3'
miRNA:   3'- -GUUUuuGCaCG--CCGCGCGGCGCCGCg -5'
21215 3' -57.7 NC_004778.3 + 29328 0.75 0.347396
Target:  5'- gAAGGugGcGCGGCGCGCgcUGgGGUGCg -3'
miRNA:   3'- gUUUUugCaCGCCGCGCG--GCgCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 77361 0.74 0.363076
Target:  5'- -------uUGUGGCGCGCCGC-GCGCu -3'
miRNA:   3'- guuuuugcACGCCGCGCGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 31730 0.74 0.370291
Target:  5'- --------cGCGGCGCGCUuuauggaguuuaaGCGGCGCg -3'
miRNA:   3'- guuuuugcaCGCCGCGCGG-------------CGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.