miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21215 3' -57.7 NC_004778.3 + 86300 1.1 0.001538
Target:  5'- uCAAAAACGUGCGGCGCGCCGCGGCGCc -3'
miRNA:   3'- -GUUUUUGCACGCCGCGCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 132 0.89 0.044219
Target:  5'- gAAAAAC-UGCGGCGCGuCCGCGGCGUa -3'
miRNA:   3'- gUUUUUGcACGCCGCGC-GGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 34182 0.82 0.121582
Target:  5'- ---cGACgGUGCGGU-CGCCGCGGCGCa -3'
miRNA:   3'- guuuUUG-CACGCCGcGCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 120695 0.81 0.138343
Target:  5'- --uGGACGggGUGGCGCGCCaCGGCGCc -3'
miRNA:   3'- guuUUUGCa-CGCCGCGCGGcGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 15685 0.8 0.173929
Target:  5'- cCAAcAACGUGCucgacgauGGCGCGCUGCuGCGCg -3'
miRNA:   3'- -GUUuUUGCACG--------CCGCGCGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 24285 0.79 0.187498
Target:  5'- -uGAAACGgaGCcaacaaGCGCGCCGCGGCGCc -3'
miRNA:   3'- guUUUUGCa-CGc-----CGCGCGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 71671 0.78 0.228308
Target:  5'- gGAAuACGUGUGGCGCuuGgCGCGGCGg -3'
miRNA:   3'- gUUUuUGCACGCCGCG--CgGCGCCGCg -5'
21215 3' -57.7 NC_004778.3 + 67398 0.76 0.276381
Target:  5'- gGAAAACGUGgGGUuuuugGCGCCGCucucGGCGUc -3'
miRNA:   3'- gUUUUUGCACgCCG-----CGCGGCG----CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 33653 0.76 0.276381
Target:  5'- aCGGAGGCGcagcgcgGcCGGCGCGCUGCcGCGCg -3'
miRNA:   3'- -GUUUUUGCa------C-GCCGCGCGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 112462 0.76 0.276381
Target:  5'- aUAAGGAUGUGCGGCagucgcucGCGCCaGCGGC-Cg -3'
miRNA:   3'- -GUUUUUGCACGCCG--------CGCGG-CGCCGcG- -5'
21215 3' -57.7 NC_004778.3 + 79991 0.76 0.289598
Target:  5'- cCAuAAACGUGCccucgcaagaGGCuGCGUCgGCGGCGCa -3'
miRNA:   3'- -GUuUUUGCACG----------CCG-CGCGG-CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 96751 0.76 0.296391
Target:  5'- ----uACGcuaGCGGCGUagacgcgcagcuGCCGCGGCGCg -3'
miRNA:   3'- guuuuUGCa--CGCCGCG------------CGGCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 110002 0.75 0.317509
Target:  5'- --cGGugGUGaccacgguguuuCGGCGCGCCGaCGGCGUu -3'
miRNA:   3'- guuUUugCAC------------GCCGCGCGGC-GCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 108431 0.75 0.324795
Target:  5'- --uGGACGcGCuGGUGCGCCGCGG-GCu -3'
miRNA:   3'- guuUUUGCaCG-CCGCGCGGCGCCgCG- -5'
21215 3' -57.7 NC_004778.3 + 110800 0.75 0.329969
Target:  5'- uGGGGGCGguagGCGGCGCGCgGCguuuuuugcucacgGGCGUg -3'
miRNA:   3'- gUUUUUGCa---CGCCGCGCGgCG--------------CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 83222 0.75 0.332205
Target:  5'- -cAAGGCGUGaUGGUGCGCCGCGacgaaaaaagucGCGUa -3'
miRNA:   3'- guUUUUGCAC-GCCGCGCGGCGC------------CGCG- -5'
21215 3' -57.7 NC_004778.3 + 32445 0.75 0.339739
Target:  5'- gCAucAGCaUGCGGCGCaGCCGCuGCGUg -3'
miRNA:   3'- -GUuuUUGcACGCCGCG-CGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 95244 0.75 0.339739
Target:  5'- gCGGAcuCGgGCauGGUGCGCCGCGGCGa -3'
miRNA:   3'- -GUUUuuGCaCG--CCGCGCGGCGCCGCg -5'
21215 3' -57.7 NC_004778.3 + 112322 0.75 0.346624
Target:  5'- gCAAcgGCGuUGCcacgguaGGCGCGCCGC-GCGCa -3'
miRNA:   3'- -GUUuuUGC-ACG-------CCGCGCGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 29328 0.75 0.347396
Target:  5'- gAAGGugGcGCGGCGCGCgcUGgGGUGCg -3'
miRNA:   3'- gUUUUugCaCGCCGCGCG--GCgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.