miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21215 5' -57.2 NC_004778.3 + 101017 0.66 0.782019
Target:  5'- -aGCGCuGCAGCgcuucaaaacUGCCGGgaaUGGUuuuGAGGg -3'
miRNA:   3'- aaCGCGuCGUCG----------GCGGCC---AUCA---UUCC- -5'
21215 5' -57.2 NC_004778.3 + 88337 0.66 0.772559
Target:  5'- -aGCGCAGCugcguGCUGCacaaaugcgucgUGGUGGUGuuGGGc -3'
miRNA:   3'- aaCGCGUCGu----CGGCG------------GCCAUCAU--UCC- -5'
21215 5' -57.2 NC_004778.3 + 2454 0.66 0.772559
Target:  5'- -aGUGCGGCAcGCCGCUGGUu------ -3'
miRNA:   3'- aaCGCGUCGU-CGGCGGCCAucauucc -5'
21215 5' -57.2 NC_004778.3 + 78390 0.67 0.752282
Target:  5'- -aGCGCAGUugccacaacaacuGGCCGCCucuGUGGUAGa- -3'
miRNA:   3'- aaCGCGUCG-------------UCGGCGGc--CAUCAUUcc -5'
21215 5' -57.2 NC_004778.3 + 102233 0.68 0.717461
Target:  5'- -aGCGCGGCAGCgaacuuuugcugaacCGCCGG-GGacAGGu -3'
miRNA:   3'- aaCGCGUCGUCG---------------GCGGCCaUCauUCC- -5'
21215 5' -57.2 NC_004778.3 + 34239 0.68 0.672424
Target:  5'- -cGgGCAGCAGcCCGUCGGcAGccGGGc -3'
miRNA:   3'- aaCgCGUCGUC-GGCGGCCaUCauUCC- -5'
21215 5' -57.2 NC_004778.3 + 30816 0.68 0.662069
Target:  5'- -gGgGCAGCucgaccGGCCGCUggaGGUGGUAGGc -3'
miRNA:   3'- aaCgCGUCG------UCGGCGG---CCAUCAUUCc -5'
21215 5' -57.2 NC_004778.3 + 95280 0.69 0.630887
Target:  5'- cUGCGCAGCuugucGCCGCCGGc------- -3'
miRNA:   3'- aACGCGUCGu----CGGCGGCCaucauucc -5'
21215 5' -57.2 NC_004778.3 + 111278 0.69 0.620484
Target:  5'- aUGCGCguuAGCgccuuGGCCGCC-GUGGUGAGc -3'
miRNA:   3'- aACGCG---UCG-----UCGGCGGcCAUCAUUCc -5'
21215 5' -57.2 NC_004778.3 + 96768 0.7 0.568759
Target:  5'- -cGCGCAGCuGCCGCggCGcGUGGUGcguaaugugcAGGu -3'
miRNA:   3'- aaCGCGUCGuCGGCG--GC-CAUCAU----------UCC- -5'
21215 5' -57.2 NC_004778.3 + 25654 0.71 0.528161
Target:  5'- cUUGCGCGGgGGCCGgCGGcguGUGGGu -3'
miRNA:   3'- -AACGCGUCgUCGGCgGCCau-CAUUCc -5'
21215 5' -57.2 NC_004778.3 + 95779 0.71 0.50826
Target:  5'- -cGCGCGGCAGCgCGCCGGc------- -3'
miRNA:   3'- aaCGCGUCGUCG-GCGGCCaucauucc -5'
21215 5' -57.2 NC_004778.3 + 32839 0.72 0.469469
Target:  5'- -cGCGCuAGCGGCCGCCGcGcUGGcUAgcAGGg -3'
miRNA:   3'- aaCGCG-UCGUCGGCGGC-C-AUC-AU--UCC- -5'
21215 5' -57.2 NC_004778.3 + 112214 0.72 0.460007
Target:  5'- -cGCGCauAGCGGCCGCgCGGUccaGGUGAu- -3'
miRNA:   3'- aaCGCG--UCGUCGGCG-GCCA---UCAUUcc -5'
21215 5' -57.2 NC_004778.3 + 86337 1.07 0.00215
Target:  5'- cUUGCGCAGCAGCCGCCGGUAGUAAGGc -3'
miRNA:   3'- -AACGCGUCGUCGGCGGCCAUCAUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.