miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21217 5' -50.9 NC_004778.3 + 76593 0.66 0.992734
Target:  5'- --cGGAaaagaacuGCACAa--UCAGCGCCGGCa -3'
miRNA:   3'- gcuCCU--------UGUGUaacAGUUGUGGCCGc -5'
21217 5' -50.9 NC_004778.3 + 59352 0.66 0.992091
Target:  5'- aUGuGGAccacuaauucgcacaACGCGUccagGUUGGCGCCGGUGg -3'
miRNA:   3'- -GCuCCU---------------UGUGUAa---CAGUUGUGGCCGC- -5'
21217 5' -50.9 NC_004778.3 + 95281 0.66 0.991638
Target:  5'- -----uGCGCAgcUUGUCGcCGCCGGCGa -3'
miRNA:   3'- gcuccuUGUGU--AACAGUuGUGGCCGC- -5'
21217 5' -50.9 NC_004778.3 + 34415 0.66 0.991522
Target:  5'- cCGGGGugguccaGGCGCAccugcccGUCGGCGCaCGGCGc -3'
miRNA:   3'- -GCUCC-------UUGUGUaa-----CAGUUGUG-GCCGC- -5'
21217 5' -50.9 NC_004778.3 + 23233 0.66 0.987556
Target:  5'- gGAGGGGCACcgcaaaGcCAACACCGccGCGc -3'
miRNA:   3'- gCUCCUUGUGuaa---CaGUUGUGGC--CGC- -5'
21217 5' -50.9 NC_004778.3 + 68359 0.66 0.987556
Target:  5'- aCGAcuGGAaagcGCGCAUUcaGUCGGCGCC-GCGa -3'
miRNA:   3'- -GCU--CCU----UGUGUAA--CAGUUGUGGcCGC- -5'
21217 5' -50.9 NC_004778.3 + 2180 0.66 0.987556
Target:  5'- -aAGGAAaACAUUGUCGcgcACAUUGGCc -3'
miRNA:   3'- gcUCCUUgUGUAACAGU---UGUGGCCGc -5'
21217 5' -50.9 NC_004778.3 + 127391 0.66 0.985898
Target:  5'- uGAGGAACGCGg---CuGCGgUGGCGg -3'
miRNA:   3'- gCUCCUUGUGUaacaGuUGUgGCCGC- -5'
21217 5' -50.9 NC_004778.3 + 5128 0.66 0.985898
Target:  5'- --cGGAagACGCcgUGcCcACGCCGGCGc -3'
miRNA:   3'- gcuCCU--UGUGuaACaGuUGUGGCCGC- -5'
21217 5' -50.9 NC_004778.3 + 93331 0.66 0.985898
Target:  5'- gCGAcGGAGCGCAgcGUUucuugAACGCuCGGCu -3'
miRNA:   3'- -GCU-CCUUGUGUaaCAG-----UUGUG-GCCGc -5'
21217 5' -50.9 NC_004778.3 + 17363 0.67 0.984076
Target:  5'- cCGAGGAGCACAc---CAuCAUgGGCGu -3'
miRNA:   3'- -GCUCCUUGUGUaacaGUuGUGgCCGC- -5'
21217 5' -50.9 NC_004778.3 + 75126 0.67 0.984076
Target:  5'- --uGGccAugGCGUUGUCAACGuuGGCc -3'
miRNA:   3'- gcuCC--UugUGUAACAGUUGUggCCGc -5'
21217 5' -50.9 NC_004778.3 + 34467 0.68 0.969204
Target:  5'- uCGAGGAGCGCAccgcgGUCGagaaccaguuuaACGCCGcCGa -3'
miRNA:   3'- -GCUCCUUGUGUaa---CAGU------------UGUGGCcGC- -5'
21217 5' -50.9 NC_004778.3 + 99643 0.69 0.954957
Target:  5'- -----uACACGUUGUCGACGCCGagacGCGg -3'
miRNA:   3'- gcuccuUGUGUAACAGUUGUGGC----CGC- -5'
21217 5' -50.9 NC_004778.3 + 28014 0.69 0.946383
Target:  5'- gCGAGcAACGCAUggcgcUCAACGgCGGCGa -3'
miRNA:   3'- -GCUCcUUGUGUAac---AGUUGUgGCCGC- -5'
21217 5' -50.9 NC_004778.3 + 97806 0.69 0.941718
Target:  5'- -cGGGAACACAUuacgGcCAACGCCuGGUGc -3'
miRNA:   3'- gcUCCUUGUGUAa---CaGUUGUGG-CCGC- -5'
21217 5' -50.9 NC_004778.3 + 95204 0.69 0.941718
Target:  5'- gGccGAACACuugGUCAGCGCCGGg- -3'
miRNA:   3'- gCucCUUGUGuaaCAGUUGUGGCCgc -5'
21217 5' -50.9 NC_004778.3 + 68718 0.7 0.926187
Target:  5'- gCGGuuGGGACGCGUcuuaauaaUGUCAGCGCUGcGCa -3'
miRNA:   3'- -GCU--CCUUGUGUA--------ACAGUUGUGGC-CGc -5'
21217 5' -50.9 NC_004778.3 + 121712 0.7 0.926187
Target:  5'- gCGucGGGCACGUUGUCGgcGCGCCGuaGc -3'
miRNA:   3'- -GCucCUUGUGUAACAGU--UGUGGCcgC- -5'
21217 5' -50.9 NC_004778.3 + 114057 0.71 0.901872
Target:  5'- aGuGGGGCGgAUUGUgAGCGUCGGCGa -3'
miRNA:   3'- gCuCCUUGUgUAACAgUUGUGGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.