miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21219 3' -58.2 NC_004778.3 + 83667 1.08 0.00213
Target:  5'- aACGACGCGGACACCACCAGCUCGUCGu -3'
miRNA:   3'- -UGCUGCGCCUGUGGUGGUCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 25889 0.76 0.289476
Target:  5'- cGCGAcCGUGGGCGCUGgCAcGCUCGUCGc -3'
miRNA:   3'- -UGCU-GCGCCUGUGGUgGU-CGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 101747 0.74 0.346658
Target:  5'- gGCGaACGCGG-CACUgGCCAcGCUCGUCGu -3'
miRNA:   3'- -UGC-UGCGCCuGUGG-UGGU-CGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 72521 0.74 0.362161
Target:  5'- gACGACGCGGACGCCgACgAGC-CGa-- -3'
miRNA:   3'- -UGCUGCGCCUGUGG-UGgUCGaGCagc -5'
21219 3' -58.2 NC_004778.3 + 61360 0.73 0.394585
Target:  5'- cAUG-UGCGGACGgCGCCGGCgCGUCGu -3'
miRNA:   3'- -UGCuGCGCCUGUgGUGGUCGaGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 81304 0.72 0.446593
Target:  5'- gGCGGCGCGGAUugCcCCuGUUUGUUGc -3'
miRNA:   3'- -UGCUGCGCCUGugGuGGuCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 34049 0.72 0.446593
Target:  5'- uGCGACGCGcuugcuugaaACACCacguccgcguccGCCAGCUCGUUGu -3'
miRNA:   3'- -UGCUGCGCc---------UGUGG------------UGGUCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 95757 0.72 0.446593
Target:  5'- aACGugucauACGUGGuCACCACCacucgcGGCUCGUCa -3'
miRNA:   3'- -UGC------UGCGCCuGUGGUGG------UCGAGCAGc -5'
21219 3' -58.2 NC_004778.3 + 29166 0.72 0.455629
Target:  5'- cGCGAgCGCGuGACGCUGCCacGGgUCGUCGc -3'
miRNA:   3'- -UGCU-GCGC-CUGUGGUGG--UCgAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 38459 0.72 0.483308
Target:  5'- uCGuCGCGGuuccGCAUCAcguaugaguCCAGCUCGUCGa -3'
miRNA:   3'- uGCuGCGCC----UGUGGU---------GGUCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 36467 0.72 0.483308
Target:  5'- gUGugGUGGGCGCCACCAcgcGCUUGg-- -3'
miRNA:   3'- uGCugCGCCUGUGGUGGU---CGAGCagc -5'
21219 3' -58.2 NC_004778.3 + 7156 0.71 0.511771
Target:  5'- gGCGG-GCGGcGCGCCgagcACUAGCUCGUUGa -3'
miRNA:   3'- -UGCUgCGCC-UGUGG----UGGUCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 52055 0.71 0.530151
Target:  5'- aGCGACGCGGccggcgcgugcgcAUugCACCAGCgCG-CGg -3'
miRNA:   3'- -UGCUGCGCC-------------UGugGUGGUCGaGCaGC- -5'
21219 3' -58.2 NC_004778.3 + 19433 0.71 0.544831
Target:  5'- uCGGCGCGccgaaACACCguggucaccaccgacACCAGCUUGUCGu -3'
miRNA:   3'- uGCUGCGCc----UGUGG---------------UGGUCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 36512 0.7 0.549754
Target:  5'- gACGACGCGGGugucgcgaggccuUACCuaugcgacGCCGGCUCGcugCGg -3'
miRNA:   3'- -UGCUGCGCCU-------------GUGG--------UGGUCGAGCa--GC- -5'
21219 3' -58.2 NC_004778.3 + 112551 0.7 0.55074
Target:  5'- gACGGCaGUGaGCACCGCCAuGUUUGUCGc -3'
miRNA:   3'- -UGCUG-CGCcUGUGGUGGU-CGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 16286 0.7 0.590569
Target:  5'- uACGACGCGGuuguaaACgUGCCGGCaggCGUCGg -3'
miRNA:   3'- -UGCUGCGCCug----UG-GUGGUCGa--GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 114366 0.69 0.606656
Target:  5'- cGCGcCGCGGGCgaggccgGCCcuugcguagcaacgGCCGGCUUGUCa -3'
miRNA:   3'- -UGCuGCGCCUG-------UGG--------------UGGUCGAGCAGc -5'
21219 3' -58.2 NC_004778.3 + 82671 0.69 0.607663
Target:  5'- uUGGCGCGGGCgccaaGCCGCCAaacacgguuuggacGgUCGUCGc -3'
miRNA:   3'- uGCUGCGCCUG-----UGGUGGU--------------CgAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 106355 0.69 0.609678
Target:  5'- -gGACGCgcuggaaaaaauuGGACACCaaaacgACCuGCUCGUCa -3'
miRNA:   3'- ugCUGCG-------------CCUGUGG------UGGuCGAGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.