miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21219 3' -58.2 NC_004778.3 + 113901 0.66 0.813376
Target:  5'- gGCGAagGCGG-CGCCGCgGGUUCcUCGc -3'
miRNA:   3'- -UGCUg-CGCCuGUGGUGgUCGAGcAGC- -5'
21219 3' -58.2 NC_004778.3 + 34151 0.68 0.701104
Target:  5'- gACGACGCGGuCGCCGgCGGCg----- -3'
miRNA:   3'- -UGCUGCGCCuGUGGUgGUCGagcagc -5'
21219 3' -58.2 NC_004778.3 + 107694 0.67 0.730528
Target:  5'- uGCG-CGUGGAgGCCGCCAcGCgcgGUCa -3'
miRNA:   3'- -UGCuGCGCCUgUGGUGGU-CGag-CAGc -5'
21219 3' -58.2 NC_004778.3 + 89888 0.67 0.759206
Target:  5'- aGCGugGUGGGCGCaAgCGGCUUG-CGc -3'
miRNA:   3'- -UGCugCGCCUGUGgUgGUCGAGCaGC- -5'
21219 3' -58.2 NC_004778.3 + 97402 0.67 0.777793
Target:  5'- gGCGGCGCgcaaGGAaGCCGCCGGUUCu--- -3'
miRNA:   3'- -UGCUGCG----CCUgUGGUGGUCGAGcagc -5'
21219 3' -58.2 NC_004778.3 + 82612 0.66 0.7869
Target:  5'- gAUGAgGCGGcgaGCCGCCGcGCgauagCGUCGc -3'
miRNA:   3'- -UGCUgCGCCug-UGGUGGU-CGa----GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 43856 0.66 0.795872
Target:  5'- cCGACGCGGcaACAgguGCCGGCUCGg-- -3'
miRNA:   3'- uGCUGCGCC--UGUgg-UGGUCGAGCagc -5'
21219 3' -58.2 NC_004778.3 + 88709 0.66 0.795872
Target:  5'- aGCGGCGCGuGCGCUcCCaauugAGCUUGUUGu -3'
miRNA:   3'- -UGCUGCGCcUGUGGuGG-----UCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 1654 0.66 0.813376
Target:  5'- aGCGACGCGucguuGGCACCuuCGGUUUGggugCGg -3'
miRNA:   3'- -UGCUGCGC-----CUGUGGugGUCGAGCa---GC- -5'
21219 3' -58.2 NC_004778.3 + 106355 0.69 0.609678
Target:  5'- -gGACGCgcuggaaaaaauuGGACACCaaaacgACCuGCUCGUCa -3'
miRNA:   3'- ugCUGCG-------------CCUGUGG------UGGuCGAGCAGc -5'
21219 3' -58.2 NC_004778.3 + 82671 0.69 0.607663
Target:  5'- uUGGCGCGGGCgccaaGCCGCCAaacacgguuuggacGgUCGUCGc -3'
miRNA:   3'- uGCUGCGCCUG-----UGGUGGU--------------CgAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 114366 0.69 0.606656
Target:  5'- cGCGcCGCGGGCgaggccgGCCcuugcguagcaacgGCCGGCUUGUCa -3'
miRNA:   3'- -UGCuGCGCCUG-------UGG--------------UGGUCGAGCAGc -5'
21219 3' -58.2 NC_004778.3 + 72521 0.74 0.362161
Target:  5'- gACGACGCGGACGCCgACgAGC-CGa-- -3'
miRNA:   3'- -UGCUGCGCCUGUGG-UGgUCGaGCagc -5'
21219 3' -58.2 NC_004778.3 + 61360 0.73 0.394585
Target:  5'- cAUG-UGCGGACGgCGCCGGCgCGUCGu -3'
miRNA:   3'- -UGCuGCGCCUGUgGUGGUCGaGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 81304 0.72 0.446593
Target:  5'- gGCGGCGCGGAUugCcCCuGUUUGUUGc -3'
miRNA:   3'- -UGCUGCGCCUGugGuGGuCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 29166 0.72 0.455629
Target:  5'- cGCGAgCGCGuGACGCUGCCacGGgUCGUCGc -3'
miRNA:   3'- -UGCU-GCGC-CUGUGGUGG--UCgAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 36467 0.72 0.483308
Target:  5'- gUGugGUGGGCGCCACCAcgcGCUUGg-- -3'
miRNA:   3'- uGCugCGCCUGUGGUGGU---CGAGCagc -5'
21219 3' -58.2 NC_004778.3 + 7156 0.71 0.511771
Target:  5'- gGCGG-GCGGcGCGCCgagcACUAGCUCGUUGa -3'
miRNA:   3'- -UGCUgCGCC-UGUGG----UGGUCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 112551 0.7 0.55074
Target:  5'- gACGGCaGUGaGCACCGCCAuGUUUGUCGc -3'
miRNA:   3'- -UGCUG-CGCcUGUGGUGGU-CGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 16286 0.7 0.590569
Target:  5'- uACGACGCGGuuguaaACgUGCCGGCaggCGUCGg -3'
miRNA:   3'- -UGCUGCGCCug----UG-GUGGUCGa--GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.