miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21220 5' -58.6 NC_004778.3 + 82100 1.06 0.002088
Target:  5'- gCGGCGGCAUCACCUCGUUGGCACCGUu -3'
miRNA:   3'- -GCCGCCGUAGUGGAGCAACCGUGGCA- -5'
21220 5' -58.6 NC_004778.3 + 43110 0.72 0.448464
Target:  5'- cCGGCGGCugcugcgcaagCGCUUCGacGGCGCCGc -3'
miRNA:   3'- -GCCGCCGua---------GUGGAGCaaCCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 56137 0.7 0.505465
Target:  5'- uGGCGGUcgugcgcgugacgGUCACUUCGUUGgaaGCGCUGg -3'
miRNA:   3'- gCCGCCG-------------UAGUGGAGCAAC---CGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 110104 0.7 0.516082
Target:  5'- aCGGCGuGCG-CGCCgagCGcuugGGCACCGg -3'
miRNA:   3'- -GCCGC-CGUaGUGGa--GCaa--CCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 89187 0.7 0.535608
Target:  5'- aCGGUGGCcgCGCC-CGUcuuuuugGGCGCCu- -3'
miRNA:   3'- -GCCGCCGuaGUGGaGCAa------CCGUGGca -5'
21220 5' -58.6 NC_004778.3 + 61888 0.69 0.565355
Target:  5'- uGGCGGCAcagauaaagCGCCUCGUUaaacuGCGCCa- -3'
miRNA:   3'- gCCGCCGUa--------GUGGAGCAAc----CGUGGca -5'
21220 5' -58.6 NC_004778.3 + 7985 0.69 0.565355
Target:  5'- uGGCGGCAgUUACUaUGUgcgcGGCGCCGa -3'
miRNA:   3'- gCCGCCGU-AGUGGaGCAa---CCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 121433 0.69 0.565355
Target:  5'- uCGGCcGUGUCGCCgcCGUcGGCGCCGc -3'
miRNA:   3'- -GCCGcCGUAGUGGa-GCAaCCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 71185 0.69 0.585427
Target:  5'- uCGGCaagGGUGUCGCCgaaggCGUUGGCgagggugucGCCGa -3'
miRNA:   3'- -GCCG---CCGUAGUGGa----GCAACCG---------UGGCa -5'
21220 5' -58.6 NC_004778.3 + 9011 0.69 0.60563
Target:  5'- gGGCGGCGggcugCAUUugUCGcaGGCGCCGUc -3'
miRNA:   3'- gCCGCCGUa----GUGG--AGCaaCCGUGGCA- -5'
21220 5' -58.6 NC_004778.3 + 120719 0.68 0.625911
Target:  5'- cCGGCGGCGUCAaaguUCUCGgccaaACCGUa -3'
miRNA:   3'- -GCCGCCGUAGU----GGAGCaaccgUGGCA- -5'
21220 5' -58.6 NC_004778.3 + 19241 0.68 0.625911
Target:  5'- uCGGaGGCuUCAgCUUG-UGGCGCCGUc -3'
miRNA:   3'- -GCCgCCGuAGUgGAGCaACCGUGGCA- -5'
21220 5' -58.6 NC_004778.3 + 17501 0.68 0.645197
Target:  5'- aCGGCGGCugcUCGuuUCGUUGGUgggagucGCUGa -3'
miRNA:   3'- -GCCGCCGu--AGUggAGCAACCG-------UGGCa -5'
21220 5' -58.6 NC_004778.3 + 77332 0.68 0.656349
Target:  5'- uCGGCGGCgaGUCcuCCUCGUcguccuccuugUGGCgcGCCGc -3'
miRNA:   3'- -GCCGCCG--UAGu-GGAGCA-----------ACCG--UGGCa -5'
21220 5' -58.6 NC_004778.3 + 44745 0.68 0.676558
Target:  5'- gGGCGGC-UCGCCagGUUG-CAUCGa -3'
miRNA:   3'- gCCGCCGuAGUGGagCAACcGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 44162 0.68 0.676558
Target:  5'- gCGGCGGCGacggCAUggaCGcgGGCGCCGUg -3'
miRNA:   3'- -GCCGCCGUa---GUGga-GCaaCCGUGGCA- -5'
21220 5' -58.6 NC_004778.3 + 105148 0.67 0.696624
Target:  5'- gGGCGccGCggCGCgCUUGUUGGCuCCGUu -3'
miRNA:   3'- gCCGC--CGuaGUG-GAGCAACCGuGGCA- -5'
21220 5' -58.6 NC_004778.3 + 29388 0.67 0.726302
Target:  5'- gGGCGaCAcCACCacggCGUUGGUACUGg -3'
miRNA:   3'- gCCGCcGUaGUGGa---GCAACCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 21715 0.67 0.726302
Target:  5'- uGcGCGGCGUCuauACCUCGUcGcGCuacuCCGUa -3'
miRNA:   3'- gC-CGCCGUAG---UGGAGCAaC-CGu---GGCA- -5'
21220 5' -58.6 NC_004778.3 + 59035 0.67 0.726302
Target:  5'- uCGGCGGCua-ACCgcucggCGUUGGCcuccaGCCa- -3'
miRNA:   3'- -GCCGCCGuagUGGa-----GCAACCG-----UGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.