miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21220 5' -58.6 NC_004778.3 + 1648 0.67 0.736047
Target:  5'- gCGGaaaGCGaCGCgUCGUUGGCACCu- -3'
miRNA:   3'- -GCCgc-CGUaGUGgAGCAACCGUGGca -5'
21220 5' -58.6 NC_004778.3 + 7985 0.69 0.565355
Target:  5'- uGGCGGCAgUUACUaUGUgcgcGGCGCCGa -3'
miRNA:   3'- gCCGCCGU-AGUGGaGCAa---CCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 8807 0.66 0.755261
Target:  5'- aGGCGGCGggCGCgCUCagcgaaUGGCGCCu- -3'
miRNA:   3'- gCCGCCGUa-GUG-GAGca----ACCGUGGca -5'
21220 5' -58.6 NC_004778.3 + 9011 0.69 0.60563
Target:  5'- gGGCGGCGggcugCAUUugUCGcaGGCGCCGUc -3'
miRNA:   3'- gCCGCCGUa----GUGG--AGCaaCCGUGGCA- -5'
21220 5' -58.6 NC_004778.3 + 17501 0.68 0.645197
Target:  5'- aCGGCGGCugcUCGuuUCGUUGGUgggagucGCUGa -3'
miRNA:   3'- -GCCGCCGu--AGUggAGCAACCG-------UGGCa -5'
21220 5' -58.6 NC_004778.3 + 19241 0.68 0.625911
Target:  5'- uCGGaGGCuUCAgCUUG-UGGCGCCGUc -3'
miRNA:   3'- -GCCgCCGuAGUgGAGCaACCGUGGCA- -5'
21220 5' -58.6 NC_004778.3 + 19508 0.66 0.783258
Target:  5'- uGGuuGCG-CACCUCGUcgGGCACUu- -3'
miRNA:   3'- gCCgcCGUaGUGGAGCAa-CCGUGGca -5'
21220 5' -58.6 NC_004778.3 + 21715 0.67 0.726302
Target:  5'- uGcGCGGCGUCuauACCUCGUcGcGCuacuCCGUa -3'
miRNA:   3'- gC-CGCCGUAG---UGGAGCAaC-CGu---GGCA- -5'
21220 5' -58.6 NC_004778.3 + 29388 0.67 0.726302
Target:  5'- gGGCGaCAcCACCacggCGUUGGUACUGg -3'
miRNA:   3'- gCCGCcGUaGUGGa---GCAACCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 35983 0.66 0.792335
Target:  5'- cCGaCGGcCGUCAaCUCGUugggaUGGCACCGc -3'
miRNA:   3'- -GCcGCC-GUAGUgGAGCA-----ACCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 43110 0.72 0.448464
Target:  5'- cCGGCGGCugcugcgcaagCGCUUCGacGGCGCCGc -3'
miRNA:   3'- -GCCGCCGua---------GUGGAGCaaCCGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 44162 0.68 0.676558
Target:  5'- gCGGCGGCGacggCAUggaCGcgGGCGCCGUg -3'
miRNA:   3'- -GCCGCCGUa---GUGga-GCaaCCGUGGCA- -5'
21220 5' -58.6 NC_004778.3 + 44745 0.68 0.676558
Target:  5'- gGGCGGC-UCGCCagGUUG-CAUCGa -3'
miRNA:   3'- gCCGCCGuAGUGGagCAACcGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 56137 0.7 0.505465
Target:  5'- uGGCGGUcgugcgcgugacgGUCACUUCGUUGgaaGCGCUGg -3'
miRNA:   3'- gCCGCCG-------------UAGUGGAGCAAC---CGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 59035 0.67 0.726302
Target:  5'- uCGGCGGCua-ACCgcucggCGUUGGCcuccaGCCa- -3'
miRNA:   3'- -GCCGCCGuagUGGa-----GCAACCG-----UGGca -5'
21220 5' -58.6 NC_004778.3 + 61888 0.69 0.565355
Target:  5'- uGGCGGCAcagauaaagCGCCUCGUUaaacuGCGCCa- -3'
miRNA:   3'- gCCGCCGUa--------GUGGAGCAAc----CGUGGca -5'
21220 5' -58.6 NC_004778.3 + 64165 0.66 0.745703
Target:  5'- gCGGUGGgcgucCAUCACgUCGUacaauUGcGCGCCGa -3'
miRNA:   3'- -GCCGCC-----GUAGUGgAGCA-----AC-CGUGGCa -5'
21220 5' -58.6 NC_004778.3 + 67779 0.66 0.765651
Target:  5'- uCGGCGGCuggcccagcaugcgCGCggCGUUGGCGCgCGc -3'
miRNA:   3'- -GCCGCCGua------------GUGgaGCAACCGUG-GCa -5'
21220 5' -58.6 NC_004778.3 + 71185 0.69 0.585427
Target:  5'- uCGGCaagGGUGUCGCCgaaggCGUUGGCgagggugucGCCGa -3'
miRNA:   3'- -GCCG---CCGUAGUGGa----GCAACCG---------UGGCa -5'
21220 5' -58.6 NC_004778.3 + 76940 0.66 0.745703
Target:  5'- gGGCGGC---GCUUCGUUGGUGCa-- -3'
miRNA:   3'- gCCGCCGuagUGGAGCAACCGUGgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.