miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21228 5' -59.7 NC_004778.3 + 15321 0.66 0.747635
Target:  5'- aGCCGGuCGCguugucgcgcgUGUCC-CGCAcGAAGUCg -3'
miRNA:   3'- gCGGCC-GCG-----------GCAGGcGUGUaCUUCGG- -5'
21228 5' -59.7 NC_004778.3 + 126903 0.66 0.747635
Target:  5'- uGCUGGCGgCG-CCGCAUGcUGGacaAGUCg -3'
miRNA:   3'- gCGGCCGCgGCaGGCGUGU-ACU---UCGG- -5'
21228 5' -59.7 NC_004778.3 + 112203 0.66 0.747635
Target:  5'- -cUCGGCGCCcUCgCGCAUAgc-GGCCg -3'
miRNA:   3'- gcGGCCGCGGcAG-GCGUGUacuUCGG- -5'
21228 5' -59.7 NC_004778.3 + 58093 0.66 0.747635
Target:  5'- aGUCGGacuugcCGCCG-CCGCGCcucGAGCCc -3'
miRNA:   3'- gCGGCC------GCGGCaGGCGUGuacUUCGG- -5'
21228 5' -59.7 NC_004778.3 + 88215 0.66 0.746687
Target:  5'- uGCCGGCgcgGCCGcCCGUcaaacgcgaaaccACGUGcgacgguguGGCCa -3'
miRNA:   3'- gCGGCCG---CGGCaGGCG-------------UGUACu--------UCGG- -5'
21228 5' -59.7 NC_004778.3 + 34161 0.66 0.741935
Target:  5'- uCGCCGGCGgCGacaagCUGCGCAgcaugcaggacgugcUGuGGCUg -3'
miRNA:   3'- -GCGGCCGCgGCa----GGCGUGU---------------ACuUCGG- -5'
21228 5' -59.7 NC_004778.3 + 125354 0.66 0.738117
Target:  5'- gCGCCgGGCGCCGaCCu--CGUGAAgGUCa -3'
miRNA:   3'- -GCGG-CCGCGGCaGGcguGUACUU-CGG- -5'
21228 5' -59.7 NC_004778.3 + 38680 0.66 0.738117
Target:  5'- aCGCCaaaGGCGUgaGUuuGCaagGCAUGGAcGCCg -3'
miRNA:   3'- -GCGG---CCGCGg-CAggCG---UGUACUU-CGG- -5'
21228 5' -59.7 NC_004778.3 + 64920 0.66 0.738117
Target:  5'- gGCCaucGGCGCCGUgUGCACGguuuauGCa -3'
miRNA:   3'- gCGG---CCGCGGCAgGCGUGUacuu--CGg -5'
21228 5' -59.7 NC_004778.3 + 101068 0.66 0.738117
Target:  5'- gGCCGuCGCCG-CCGCAaaugggUAUGAAcCCg -3'
miRNA:   3'- gCGGCcGCGGCaGGCGU------GUACUUcGG- -5'
21228 5' -59.7 NC_004778.3 + 26080 0.66 0.738117
Target:  5'- gGCCacGGCGCUGUacauaaUCGCGCuuuUGuuGGCCg -3'
miRNA:   3'- gCGG--CCGCGGCA------GGCGUGu--ACu-UCGG- -5'
21228 5' -59.7 NC_004778.3 + 125979 0.66 0.738117
Target:  5'- aGCUGcaGCGCaugaaGgCCGCGCAUGAcGCUg -3'
miRNA:   3'- gCGGC--CGCGg----CaGGCGUGUACUuCGG- -5'
21228 5' -59.7 NC_004778.3 + 21130 0.66 0.738117
Target:  5'- uCGCCGacGUGCCGcUCUGCgGCGUcgGGAGCg -3'
miRNA:   3'- -GCGGC--CGCGGC-AGGCG-UGUA--CUUCGg -5'
21228 5' -59.7 NC_004778.3 + 18640 0.66 0.738117
Target:  5'- aCGCCGcGCGCCGccuaCCGCcccCAaGAAaguuGCCg -3'
miRNA:   3'- -GCGGC-CGCGGCa---GGCGu--GUaCUU----CGG- -5'
21228 5' -59.7 NC_004778.3 + 129296 0.66 0.728512
Target:  5'- uGCUGGCGCUGUacgCCGCGgAcgc-GCCg -3'
miRNA:   3'- gCGGCCGCGGCA---GGCGUgUacuuCGG- -5'
21228 5' -59.7 NC_004778.3 + 57142 0.66 0.728512
Target:  5'- uCGCCuGGC-CCG-CCGCACAgguccagcGCCg -3'
miRNA:   3'- -GCGG-CCGcGGCaGGCGUGUacuu----CGG- -5'
21228 5' -59.7 NC_004778.3 + 61372 0.66 0.718826
Target:  5'- gCGCCGGCGCg--UCGuCGC-UGAGcGCCa -3'
miRNA:   3'- -GCGGCCGCGgcaGGC-GUGuACUU-CGG- -5'
21228 5' -59.7 NC_004778.3 + 30054 0.66 0.718826
Target:  5'- aCGCaaacGCGCCGUCUGUACAcgcguuuggcGAGGCg -3'
miRNA:   3'- -GCGgc--CGCGGCAGGCGUGUa---------CUUCGg -5'
21228 5' -59.7 NC_004778.3 + 32450 0.66 0.718826
Target:  5'- aGCaugCGGCGCag-CCGCuGCGUGucGCCu -3'
miRNA:   3'- gCG---GCCGCGgcaGGCG-UGUACuuCGG- -5'
21228 5' -59.7 NC_004778.3 + 45282 0.66 0.718826
Target:  5'- gGCCGGCuGCUacuuuGcCCGCAgguuuuuuCAUGAAcGCCg -3'
miRNA:   3'- gCGGCCG-CGG-----CaGGCGU--------GUACUU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.