miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 5' -48.8 NC_004778.3 + 99410 0.81 0.529364
Target:  5'- ---uCG-UCGUACUCGGAAAGCGAGGu -3'
miRNA:   3'- ucuuGCgAGCAUGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 19937 0.8 0.56079
Target:  5'- gAGAACGCUCGUACUgGAAAaacAGUGAc- -3'
miRNA:   3'- -UCUUGCGAGCAUGAgCUUU---UCGCUcc -5'
21234 5' -48.8 NC_004778.3 + 125099 0.8 0.592707
Target:  5'- gAGAACGUcUGUACUC-AAAAGCGGGGu -3'
miRNA:   3'- -UCUUGCGaGCAUGAGcUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99851 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99785 0.79 0.64642
Target:  5'- gAGAACGUaUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 19849 0.79 0.64642
Target:  5'- gAGAACaCcCGUACcCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUUGcGaGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 99917 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 122518 0.79 0.64642
Target:  5'- gGGAACGggUGUuCUCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCgaGCAuGAGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 19837 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 122723 0.79 0.64642
Target:  5'- gAGAACaCcCGUACcCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUUGcGaGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122833 0.79 0.64642
Target:  5'- gAGAACaCcCGUACcCGAAAAGCGAGGu -3'
miRNA:   3'- -UCUUGcGaGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 66646 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 100049 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 66712 0.79 0.64642
Target:  5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3'
miRNA:   3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5'
21234 5' -48.8 NC_004778.3 + 99473 0.78 0.699809
Target:  5'- -cAACaCUCGUACUCGAAAAGC-AGGg -3'
miRNA:   3'- ucUUGcGAGCAUGAGCUUUUCGcUCC- -5'
21234 5' -48.8 NC_004778.3 + 122965 0.77 0.720797
Target:  5'- -uGGCaCUCGUACcCGAAAAGCGGGGu -3'
miRNA:   3'- ucUUGcGAGCAUGaGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 20075 0.76 0.771608
Target:  5'- cGAGCGUUC----UCGAAAAGCGAGGu -3'
miRNA:   3'- uCUUGCGAGcaugAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122880 0.76 0.800531
Target:  5'- gAGAACaucUGUACUUGGAAAGCGGGGu -3'
miRNA:   3'- -UCUUGcgaGCAUGAGCUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 124977 0.75 0.827941
Target:  5'- cGGAACGUcUGUACUU-AAAAGCGGGGu -3'
miRNA:   3'- -UCUUGCGaGCAUGAGcUUUUCGCUCC- -5'
21234 5' -48.8 NC_004778.3 + 122475 0.75 0.836696
Target:  5'- -cAACaaUCGUACcCGAAAAGCGAGGu -3'
miRNA:   3'- ucUUGcgAGCAUGaGCUUUUCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.