Results 21 - 40 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 31413 | 0.66 | 0.997948 |
Target: 5'- cGAACGCaaGUuuCUCGGc--GCGAGGu -3' miRNA: 3'- uCUUGCGagCAu-GAGCUuuuCGCUCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 43339 | 0.66 | 0.998586 |
Target: 5'- uGGGCGC-CGga-UCGAGAAGC-AGGc -3' miRNA: 3'- uCUUGCGaGCaugAGCUUUUCGcUCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 66454 | 0.7 | 0.971292 |
Target: 5'- cGAGCGUUC----UCGAAAAGCGAGu -3' miRNA: 3'- uCUUGCGAGcaugAGCUUUUCGCUCc -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 66585 | 0.7 | 0.971292 |
Target: 5'- cGAGCGUUC----UCGAAAAGCGAGu -3' miRNA: 3'- uCUUGCGAGcaugAGCUUUUCGCUCc -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 66593 | 1.12 | 0.00961 |
Target: 5'- gAGAACGCUCGUACUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUUGCGAGCAUGAGCUUUUCGCUCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 66646 | 0.79 | 0.64642 |
Target: 5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3' miRNA: 3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 66712 | 0.79 | 0.64642 |
Target: 5'- gAGAACGUcUGUACcCGAAAAGCGAGu -3' miRNA: 3'- -UCUUGCGaGCAUGaGCUUUUCGCUCc -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 66722 | 0.93 | 0.125614 |
Target: 5'- -aGACGCUCGUGCcCGAAAAGCGAGGu -3' miRNA: 3'- ucUUGCGAGCAUGaGCUUUUCGCUCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 66808 | 0.73 | 0.904712 |
Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 66841 | 0.84 | 0.376269 |
Target: 5'- aAGAACGUaUGUACcCGAAAAGCGAGGc -3' miRNA: 3'- -UCUUGCGaGCAUGaGCUUUUCGCUCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 66874 | 0.73 | 0.904712 |
Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 66922 | 0.69 | 0.987185 |
Target: 5'- --cGCGUacagaCGUuCUCGAAAAGUGAGGu -3' miRNA: 3'- ucuUGCGa----GCAuGAGCUUUUCGCUCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 67041 | 0.67 | 0.997504 |
Target: 5'- -uGACGC-CGUACUCGAAAaaaaaacGGCGccGa -3' miRNA: 3'- ucUUGCGaGCAUGAGCUUU-------UCGCucC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 80565 | 0.66 | 0.998586 |
Target: 5'- -uGGCGC-CGUACUuugacgCGAucaucAGCGAGGg -3' miRNA: 3'- ucUUGCGaGCAUGA------GCUuu---UCGCUCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 84454 | 0.67 | 0.996549 |
Target: 5'- -aAGCGCaCGUGCUCGA--AGCGGu- -3' miRNA: 3'- ucUUGCGaGCAUGAGCUuuUCGCUcc -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 89442 | 0.67 | 0.995237 |
Target: 5'- cGGACGCggaCGUGCuguacgUCGAAAAGCGc-- -3' miRNA: 3'- uCUUGCGa--GCAUG------AGCUUUUCGCucc -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 92877 | 0.66 | 0.998292 |
Target: 5'- gAGAACgGCUCGgcguccaGCUUGAGccgcAGCGAGc -3' miRNA: 3'- -UCUUG-CGAGCa------UGAGCUUu---UCGCUCc -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 98847 | 0.67 | 0.997547 |
Target: 5'- cGGAGCGCggcaCGUGCUCGuuGAagaacuguuGCGcGGc -3' miRNA: 3'- -UCUUGCGa---GCAUGAGCuuUU---------CGCuCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 99237 | 0.94 | 0.115699 |
Target: 5'- gAGAACGCUCGUAUUUGuAAAGCGAGGu -3' miRNA: 3'- -UCUUGCGAGCAUGAGCuUUUCGCUCC- -5' |
|||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 99301 | 0.88 | 0.255948 |
Target: 5'- gAGAACGCUCGUGCcCuAAAAGCGGGGu -3' miRNA: 3'- -UCUUGCGAGCAUGaGcUUUUCGCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home