Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21234 | 5' | -48.8 | NC_004778.3 | + | 43339 | 0.66 | 0.998586 |
Target: 5'- uGGGCGC-CGga-UCGAGAAGC-AGGc -3' miRNA: 3'- uCUUGCGaGCaugAGCUUUUCGcUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122475 | 0.75 | 0.836696 |
Target: 5'- -cAACaaUCGUACcCGAAAAGCGAGGu -3' miRNA: 3'- ucUUGcgAGCAUGaGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 20075 | 0.76 | 0.771608 |
Target: 5'- cGAGCGUUC----UCGAAAAGCGAGGu -3' miRNA: 3'- uCUUGCGAGcaugAGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66593 | 1.12 | 0.00961 |
Target: 5'- gAGAACGCUCGUACUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUUGCGAGCAUGAGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 89442 | 0.67 | 0.995237 |
Target: 5'- cGGACGCggaCGUGCuguacgUCGAAAAGCGc-- -3' miRNA: 3'- uCUUGCGa--GCAUG------AGCUUUUCGCucc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 114075 | 0.68 | 0.991406 |
Target: 5'- --cGCGCUCGcuCUCcgcGAGCGAGGa -3' miRNA: 3'- ucuUGCGAGCauGAGcuuUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122661 | 0.69 | 0.981522 |
Target: 5'- gAGAACaCcCGUuCcCGAAAAGCGAGGu -3' miRNA: 3'- -UCUUGcGaGCAuGaGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 125228 | 0.7 | 0.97682 |
Target: 5'- -uAACaCUCGUACUUGAAAAuCGGGGu -3' miRNA: 3'- ucUUGcGAGCAUGAGCUUUUcGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 20155 | 0.72 | 0.92319 |
Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUGCcCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAUGaGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122573 | 0.75 | 0.845246 |
Target: 5'- -uAACaaUCGUACcCGAAAAGCGAGGu -3' miRNA: 3'- ucUUGcgAGCAUGaGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 19999 | 0.73 | 0.904712 |
Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 122324 | 0.71 | 0.953468 |
Target: 5'- -cGGCGCugcuuguuuucUCGUACUUGAAAAGCaAGGu -3' miRNA: 3'- ucUUGCG-----------AGCAUGAGCUUUUCGcUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 80565 | 0.66 | 0.998586 |
Target: 5'- -uGGCGC-CGUACUuugacgCGAucaucAGCGAGGg -3' miRNA: 3'- ucUUGCGaGCAUGA------GCUuu---UCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66808 | 0.73 | 0.904712 |
Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 31413 | 0.66 | 0.997948 |
Target: 5'- cGAACGCaaGUuuCUCGGc--GCGAGGu -3' miRNA: 3'- uCUUGCGagCAu-GAGCUuuuCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 99447 | 0.71 | 0.957516 |
Target: 5'- uAGGGCaCgagCGUuCUCGAAAAGCGAGc -3' miRNA: 3'- -UCUUGcGa--GCAuGAGCUUUUCGCUCc -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66874 | 0.73 | 0.904712 |
Target: 5'- aAGAuagcacuCGCUuuucggguacagaCGUuCUCGAAAAGCGAGGu -3' miRNA: 3'- -UCUu------GCGA-------------GCAuGAGCUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 124977 | 0.75 | 0.827941 |
Target: 5'- cGGAACGUcUGUACUU-AAAAGCGGGGu -3' miRNA: 3'- -UCUUGCGaGCAUGAGcUUUUCGCUCC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 67041 | 0.67 | 0.997504 |
Target: 5'- -uGACGC-CGUACUCGAAAaaaaaacGGCGccGa -3' miRNA: 3'- ucUUGCGaGCAUGAGCUUU-------UCGCucC- -5' |
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21234 | 5' | -48.8 | NC_004778.3 | + | 66922 | 0.69 | 0.987185 |
Target: 5'- --cGCGUacagaCGUuCUCGAAAAGUGAGGu -3' miRNA: 3'- ucuUGCGa----GCAuGAGCUUUUCGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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