miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 99584 0.87 0.123224
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99355 0.88 0.113722
Target:  5'- uCGUgCcCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 122889 0.89 0.09674
Target:  5'- uGUaCUUGGAAAGCGGGGUCGGCGCc -3'
miRNA:   3'- gCAaGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 99479 0.89 0.091632
Target:  5'- uCGUaCUCGAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122344 0.89 0.091632
Target:  5'- uCGUaCUCGAAAAGCaAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122780 0.9 0.084448
Target:  5'- uCGcUUUUCGAGAaaAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GC-AAGAGCUUU--UCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122567 0.91 0.069718
Target:  5'- uCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122469 0.91 0.069718
Target:  5'- uCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66716 0.91 0.069718
Target:  5'- uCGUgCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 19907 0.91 0.069718
Target:  5'- uCGUgCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 19841 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23868 0.91 0.065984
Target:  5'- cCGUaCUCGAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24065 0.91 0.065984
Target:  5'- cCGUaCUCGAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122825 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122715 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66976 0.92 0.064191
Target:  5'- aCGUUCUUaAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGcUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 20128 0.92 0.062444
Target:  5'- aCGUgCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24131 0.93 0.052892
Target:  5'- cCGUaCUCGAAAcGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24330 0.93 0.052892
Target:  5'- cCGUaCUCGAAAcGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 20194 0.96 0.033852
Target:  5'- uCGUUCcCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGaGCUUUUCGCUCCAGCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.