miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 45644 0.67 0.942617
Target:  5'- uGUcUUCGGAcAGCGAcGGUCcGCGCg -3'
miRNA:   3'- gCAaGAGCUUuUCGCU-CCAGcCGCGa -5'
21235 3' -53.2 NC_004778.3 + 48920 0.76 0.516847
Target:  5'- ---aCUCGAAca-CGAGGUCGGCGCa -3'
miRNA:   3'- gcaaGAGCUUuucGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 60949 0.72 0.723758
Target:  5'- ---aCUCuu-GAGCGuGGUCGGCGCa -3'
miRNA:   3'- gcaaGAGcuuUUCGCuCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66457 0.79 0.356245
Target:  5'- gCGUUCUCGAAAAGCGAgugcuaucuuuagacGugcGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCU---------------C---CAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66585 1 0.017718
Target:  5'- uCGUaCUCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66588 0.7 0.810385
Target:  5'- gCGUUCUCGAAAAGCGAGugcuaucuuuaGaCGuGCGUc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUC-----------CaGC-CGCGa -5'
21235 3' -53.2 NC_004778.3 + 66716 0.91 0.069718
Target:  5'- uCGUgCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66781 1.09 0.00454
Target:  5'- aCGUUCUCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66847 1.06 0.007572
Target:  5'- aCGUUCUCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66850 0.72 0.712566
Target:  5'- uGUaCcCGAAAAGCGAGGcuaucuuuaggcgUCGGCGCc -3'
miRNA:   3'- gCAaGaGCUUUUCGCUCC-------------AGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66913 1.02 0.01298
Target:  5'- aCGUUCUCGAAAAGUGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66976 0.92 0.064191
Target:  5'- aCGUUCUUaAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGcUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 99245 0.71 0.782697
Target:  5'- uCGUaUUUGuAAAGCGAGGUC-GCGCUg -3'
miRNA:   3'- -GCAaGAGCuUUUCGCUCCAGcCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99355 0.88 0.113722
Target:  5'- uCGUgCcCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 99413 0.98 0.024164
Target:  5'- uCGUaCUCGGAAAGCGAGGUCGGCGCUc -3'
miRNA:   3'- -GCAaGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99437 0.72 0.742846
Target:  5'- gCGUUCUCGAAAAGCGAGcgcuaucuuauacGUgCGucaGCGCg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUC-------------CA-GC---CGCGa -5'
21235 3' -53.2 NC_004778.3 + 99479 0.89 0.091632
Target:  5'- uCGUaCUCGAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99584 0.87 0.123224
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99650 0.87 0.123224
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99716 0.73 0.651371
Target:  5'- aCGUUCUCaAAAGGCaGGGUCGaCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCcGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.