miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 5138 0.68 0.910066
Target:  5'- cCGUUCUCGAAAcaacGCGccguGGcaaugucgCGGCGCa -3'
miRNA:   3'- -GCAAGAGCUUUu---CGCu---CCa-------GCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 19715 0.69 0.883411
Target:  5'- uGUUCUCGAAAAGCGAGugcuaucuuuaGaCGuGCGUc -3'
miRNA:   3'- gCAAGAGCUUUUCGCUC-----------CaGC-CGCGa -5'
21235 3' -53.2 NC_004778.3 + 19841 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 19907 0.91 0.069718
Target:  5'- uCGUgCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 19972 1.09 0.00454
Target:  5'- aCGUUCUCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 20040 0.68 0.910066
Target:  5'- aCGUaa--GAuagcacuGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAagagCUuuu----CGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 20072 1.05 0.008245
Target:  5'- gCGUUCUCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 20128 0.92 0.062444
Target:  5'- aCGUgCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 20194 0.96 0.033852
Target:  5'- uCGUUCcCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGaGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 23798 0.84 0.182639
Target:  5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23868 0.91 0.065984
Target:  5'- cCGUaCUCGAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23934 0.84 0.202309
Target:  5'- cCGUaCUCGAAAcGCGAGG-CGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCaGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23995 0.84 0.182639
Target:  5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24065 0.91 0.065984
Target:  5'- cCGUaCUCGAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24131 0.93 0.052892
Target:  5'- cCGUaCUCGAAAcGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24193 0.84 0.182639
Target:  5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24263 0.84 0.182639
Target:  5'- cCGUaCUCGaAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGC-UUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24330 0.93 0.052892
Target:  5'- cCGUaCUCGAAAcGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 31403 0.67 0.937818
Target:  5'- -uUUCUCGGc--GCGAGGUgCGcGCGCc -3'
miRNA:   3'- gcAAGAGCUuuuCGCUCCA-GC-CGCGa -5'
21235 3' -53.2 NC_004778.3 + 42489 0.68 0.916117
Target:  5'- aCGUUgggggUUGAGGgcGGCGuGGUCGGCGUg -3'
miRNA:   3'- -GCAAg----AGCUUU--UCGCuCCAGCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.