miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 19972 1.09 0.00454
Target:  5'- aCGUUCUCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66781 1.09 0.00454
Target:  5'- aCGUUCUCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66847 1.06 0.007572
Target:  5'- aCGUUCUCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 20072 1.05 0.008245
Target:  5'- gCGUUCUCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66913 1.02 0.01298
Target:  5'- aCGUUCUCGAAAAGUGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 66585 1 0.017718
Target:  5'- uCGUaCUCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122653 0.99 0.02284
Target:  5'- cCGUUCcCGAAAAGCGAGGUCGGCGCUu -3'
miRNA:   3'- -GCAAGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99413 0.98 0.024164
Target:  5'- uCGUaCUCGGAAAGCGAGGUCGGCGCUc -3'
miRNA:   3'- -GCAaGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122403 0.97 0.029422
Target:  5'- uCGUaCUCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAaGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 20194 0.96 0.033852
Target:  5'- uCGUUCcCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGaGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 24330 0.93 0.052892
Target:  5'- cCGUaCUCGAAAcGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24131 0.93 0.052892
Target:  5'- cCGUaCUCGAAAcGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 20128 0.92 0.062444
Target:  5'- aCGUgCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66976 0.92 0.064191
Target:  5'- aCGUUCUUaAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAAGAGcUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 19841 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23868 0.91 0.065984
Target:  5'- cCGUaCUCGAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122715 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24065 0.91 0.065984
Target:  5'- cCGUaCUCGAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122825 0.91 0.065984
Target:  5'- cCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122469 0.91 0.069718
Target:  5'- uCGUaCcCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.