Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21235 | 3' | -53.2 | NC_004778.3 | + | 122589 | 0.78 | 0.427655 |
Target: 5'- uGUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCc -3' miRNA: 3'- gCAAGAGCUUUUCGCUC--------------CAGcCGCGa -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 24193 | 0.84 | 0.182639 |
Target: 5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3' miRNA: 3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 24263 | 0.84 | 0.182639 |
Target: 5'- cCGUaCUCGaAAAAGCGcGGUCGGCGCUg -3' miRNA: 3'- -GCAaGAGC-UUUUCGCuCCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 23934 | 0.84 | 0.202309 |
Target: 5'- cCGUaCUCGAAAcGCGAGG-CGGCGCUg -3' miRNA: 3'- -GCAaGAGCUUUuCGCUCCaGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 124963 | 0.83 | 0.218246 |
Target: 5'- aCGUUCUCcAAAAGCGGGGUCGG-GCg -3' miRNA: 3'- -GCAAGAGcUUUUCGCUCCAGCCgCGa -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 122971 | 0.82 | 0.247185 |
Target: 5'- uCGUaCcCGAAAAGCGGGGUUGGCGCc -3' miRNA: 3'- -GCAaGaGCUUUUCGCUCCAGCCGCGa -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 122771 | 0.81 | 0.272565 |
Target: 5'- uGUaCUCGAAAAGUGGaGUCGGCGCUg -3' miRNA: 3'- gCAaGAGCUUUUCGCUcCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 66457 | 0.79 | 0.356245 |
Target: 5'- gCGUUCUCGAAAAGCGAgugcuaucuuuagacGugcGUCGGCGCc -3' miRNA: 3'- -GCAAGAGCUUUUCGCU---------------C---CAGCCGCGa -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 122527 | 0.78 | 0.427655 |
Target: 5'- uGUUCUCGAAAAGCGAGugcuauagacgugcGUCaGCGCc -3' miRNA: 3'- gCAAGAGCUUUUCGCUC--------------CAGcCGCGa -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 23995 | 0.84 | 0.182639 |
Target: 5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3' miRNA: 3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 23798 | 0.84 | 0.182639 |
Target: 5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3' miRNA: 3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 99650 | 0.87 | 0.123224 |
Target: 5'- aCGUUCUCaAAAAGCaGGGUCGGCGCUg -3' miRNA: 3'- -GCAAGAGcUUUUCGcUCCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 24131 | 0.93 | 0.052892 |
Target: 5'- cCGUaCUCGAAAcGCGAGGUCGGCGCUg -3' miRNA: 3'- -GCAaGAGCUUUuCGCUCCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 24330 | 0.93 | 0.052892 |
Target: 5'- cCGUaCUCGAAAcGCGAGGUCGGCGCUg -3' miRNA: 3'- -GCAaGAGCUUUuCGCUCCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 23868 | 0.91 | 0.065984 |
Target: 5'- cCGUaCUCGAAAAGCGcGGUCGGCGCUg -3' miRNA: 3'- -GCAaGAGCUUUUCGCuCCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 24065 | 0.91 | 0.065984 |
Target: 5'- cCGUaCUCGAAAAGCGcGGUCGGCGCUg -3' miRNA: 3'- -GCAaGAGCUUUUCGCuCCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 99479 | 0.89 | 0.091632 |
Target: 5'- uCGUaCUCGAAAAGCaGGGUCGGCGCUg -3' miRNA: 3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 122889 | 0.89 | 0.09674 |
Target: 5'- uGUaCUUGGAAAGCGGGGUCGGCGCc -3' miRNA: 3'- gCAaGAGCUUUUCGCUCCAGCCGCGa -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 99355 | 0.88 | 0.113722 |
Target: 5'- uCGUgCcCGAAAAGCGAGGUCGGCGCc -3' miRNA: 3'- -GCAaGaGCUUUUCGCUCCAGCCGCGa -5' |
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21235 | 3' | -53.2 | NC_004778.3 | + | 99584 | 0.87 | 0.123224 |
Target: 5'- aCGUUCUCaAAAAGCaGGGUCGGCGCUg -3' miRNA: 3'- -GCAAGAGcUUUUCGcUCCAGCCGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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