miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21235 3' -53.2 NC_004778.3 + 24131 0.93 0.052892
Target:  5'- cCGUaCUCGAAAcGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24330 0.93 0.052892
Target:  5'- cCGUaCUCGAAAcGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23868 0.91 0.065984
Target:  5'- cCGUaCUCGAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24065 0.91 0.065984
Target:  5'- cCGUaCUCGAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99479 0.89 0.091632
Target:  5'- uCGUaCUCGAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122889 0.89 0.09674
Target:  5'- uGUaCUUGGAAAGCGGGGUCGGCGCc -3'
miRNA:   3'- gCAaGAGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 99355 0.88 0.113722
Target:  5'- uCGUgCcCGAAAAGCGAGGUCGGCGCc -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 99584 0.87 0.123224
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 99650 0.87 0.123224
Target:  5'- aCGUUCUCaAAAAGCaGGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGcUUUUCGcUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 122971 0.82 0.247185
Target:  5'- uCGUaCcCGAAAAGCGGGGUUGGCGCc -3'
miRNA:   3'- -GCAaGaGCUUUUCGCUCCAGCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 124963 0.83 0.218246
Target:  5'- aCGUUCUCcAAAAGCGGGGUCGG-GCg -3'
miRNA:   3'- -GCAAGAGcUUUUCGCUCCAGCCgCGa -5'
21235 3' -53.2 NC_004778.3 + 23934 0.84 0.202309
Target:  5'- cCGUaCUCGAAAcGCGAGG-CGGCGCUg -3'
miRNA:   3'- -GCAaGAGCUUUuCGCUCCaGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24263 0.84 0.182639
Target:  5'- cCGUaCUCGaAAAAGCGcGGUCGGCGCUg -3'
miRNA:   3'- -GCAaGAGC-UUUUCGCuCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 24193 0.84 0.182639
Target:  5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23995 0.84 0.182639
Target:  5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 23798 0.84 0.182639
Target:  5'- aCGcUCguaccaGAAAAGCGGGGUCGGCGCUg -3'
miRNA:   3'- -GCaAGag----CUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 66781 1.09 0.00454
Target:  5'- aCGUUCUCGAAAAGCGAGGUCGGCGCUg -3'
miRNA:   3'- -GCAAGAGCUUUUCGCUCCAGCCGCGA- -5'
21235 3' -53.2 NC_004778.3 + 31403 0.67 0.937818
Target:  5'- -uUUCUCGGc--GCGAGGUgCGcGCGCc -3'
miRNA:   3'- gcAAGAGCUuuuCGCUCCA-GC-CGCGa -5'
21235 3' -53.2 NC_004778.3 + 114070 0.67 0.937818
Target:  5'- uCGcUCUCcgcGAGCGAGGaacccgCGGCGCc -3'
miRNA:   3'- -GCaAGAGcuuUUCGCUCCa-----GCCGCGa -5'
21235 3' -53.2 NC_004778.3 + 5138 0.68 0.910066
Target:  5'- cCGUUCUCGAAAcaacGCGccguGGcaaugucgCGGCGCa -3'
miRNA:   3'- -GCAAGAGCUUUu---CGCu---CCa-------GCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.