miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 3' -47.5 NC_004778.3 + 66879 1.12 0.010828
Target:  5'- gUCCAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 20160 1.12 0.010828
Target:  5'- gUCCAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 66813 1.12 0.010828
Target:  5'- gUCCAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 67007 1.05 0.030369
Target:  5'- cCUAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- aGGUUUCUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 20004 1.02 0.047041
Target:  5'- gUUUAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 66617 0.95 0.114119
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 66747 0.95 0.114119
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 19873 0.95 0.114119
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 99947 0.94 0.12758
Target:  5'- gUCUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUcUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 66682 0.92 0.186975
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCa-- -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGccc -5'
21236 3' -47.5 NC_004778.3 + 99881 0.89 0.262675
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUcUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 99684 0.89 0.262675
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUcUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 99750 0.89 0.262675
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUcUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 99815 0.89 0.262675
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUcUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 122857 0.86 0.370073
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCGa- -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 122435 0.82 0.545914
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGccc -5'
21236 3' -47.5 NC_004778.3 + 99281 0.81 0.589027
Target:  5'- ---uAAGAUAGCGCUCGCUUUUCGa- -3'
miRNA:   3'- agguUUCUAUCGUGAGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 99618 0.81 0.621764
Target:  5'- gUCUAAAaAUAaCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUcUAUcGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 5745 0.8 0.676371
Target:  5'- gCCAAaagacGGGUGGCGCUCGUcUUUCGGa -3'
miRNA:   3'- aGGUU-----UCUAUCGUGAGCGaAAAGCCc -5'
21236 3' -47.5 NC_004778.3 + 66944 0.8 0.676371
Target:  5'- aCguAAGAUAGCACUCGUUUUUCGc- -3'
miRNA:   3'- aGguUUCUAUCGUGAGCGAAAAGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.