miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 3' -47.5 NC_004778.3 + 5745 0.8 0.676371
Target:  5'- gCCAAaagacGGGUGGCGCUCGUcUUUCGGa -3'
miRNA:   3'- aGGUU-----UCUAUCGUGAGCGaAAAGCCc -5'
21236 3' -47.5 NC_004778.3 + 19686 0.66 0.999677
Target:  5'- --------cAGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- agguuucuaUCGUG-----AGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 19736 0.69 0.992144
Target:  5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGc -3'
miRNA:   3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 19873 0.95 0.114119
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 19938 0.79 0.697996
Target:  5'- gUUAAAGAUAGCACUUGUUUUUCGa- -3'
miRNA:   3'- aGGUUUCUAUCGUGAGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 20004 1.02 0.047041
Target:  5'- gUUUAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 20022 0.71 0.980462
Target:  5'- aUCUuuGGAcguGCGucggcgccgacCUCGCUUUUCGGGa -3'
miRNA:   3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 20040 0.66 0.999677
Target:  5'- aCguAAGAUAGCACU-GCgaggUCGGc -3'
miRNA:   3'- aGguUUCUAUCGUGAgCGaaa-AGCCc -5'
21236 3' -47.5 NC_004778.3 + 20160 1.12 0.010828
Target:  5'- gUCCAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 23967 0.73 0.930971
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGGUUUcUAUCGUGAGCGAAAaGCCc -5'
21236 3' -47.5 NC_004778.3 + 24165 0.73 0.930971
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGGUUUcUAUCGUGAGCGAAAaGCCc -5'
21236 3' -47.5 NC_004778.3 + 24364 0.73 0.930971
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGGUUUcUAUCGUGAGCGAAAaGCCc -5'
21236 3' -47.5 NC_004778.3 + 28699 0.67 0.999018
Target:  5'- gCCAAcaAUAGCGCUCGCUgcagCGc- -3'
miRNA:   3'- aGGUUucUAUCGUGAGCGAaaa-GCcc -5'
21236 3' -47.5 NC_004778.3 + 29324 0.73 0.950759
Target:  5'- cUUCGAAGGUGGCGCggCGCgcgcUGGGg -3'
miRNA:   3'- -AGGUUUCUAUCGUGa-GCGaaaaGCCC- -5'
21236 3' -47.5 NC_004778.3 + 35989 0.66 0.999591
Target:  5'- gCCGucaacucguuGGGAUGGCAC-CGCacggCGGGc -3'
miRNA:   3'- aGGU----------UUCUAUCGUGaGCGaaaaGCCC- -5'
21236 3' -47.5 NC_004778.3 + 49455 0.66 0.999677
Target:  5'- gUCCAAuGAccGCGCcgCGCUgUUCGGc -3'
miRNA:   3'- -AGGUUuCUauCGUGa-GCGAaAAGCCc -5'
21236 3' -47.5 NC_004778.3 + 66544 0.69 0.992144
Target:  5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGc -3'
miRNA:   3'- -AGGuuUCUau-CGU-----------GAGCGAAAAGCCC- -5'
21236 3' -47.5 NC_004778.3 + 66617 0.95 0.114119
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5'
21236 3' -47.5 NC_004778.3 + 66682 0.92 0.186975
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCa-- -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGccc -5'
21236 3' -47.5 NC_004778.3 + 66747 0.95 0.114119
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGa- -3'
miRNA:   3'- -AGGUUUCUAUCGUGAGCGAAAAGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.