miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 5' -55.6 NC_004778.3 + 24267 0.83 0.133861
Target:  5'- -aCUCGaAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGC-UUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122340 0.84 0.120425
Target:  5'- -aCUCGAAAAGCaAGGUCGGCGCUGc -3'
miRNA:   3'- aaGAGCUUUUCGcUCCAGCCGCGGCu -5'
21236 5' -55.6 NC_004778.3 + 124982 0.84 0.119469
Target:  5'- uUUUUCGGAacgucuguacuuaaAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AAGAGCUU--------------UUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122303 0.84 0.111182
Target:  5'- -aCUUGAAAAGCaAGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24196 0.85 0.094658
Target:  5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23998 0.85 0.094658
Target:  5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23801 0.85 0.094658
Target:  5'- cUCguaccaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aAGag----CUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 125087 0.85 0.094658
Target:  5'- -aCUC-AAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGcUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19835 0.86 0.087294
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCu -5'
21236 5' -55.6 NC_004778.3 + 122651 0.86 0.082691
Target:  5'- gUUCcCGAAAAGCGAGGUCGGCGCUu- -3'
miRNA:   3'- -AAGaGCUUUUCGCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 99483 0.88 0.062952
Target:  5'- -aCUCGAAAAGCaGGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122977 0.89 0.056403
Target:  5'- ---cCGAAAAGCGGGGUUGGCGCCGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 24069 0.9 0.047802
Target:  5'- -aCUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 23872 0.9 0.047802
Target:  5'- -aCUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- aaGAGCUUUUCGCuCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19901 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122463 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122561 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 122709 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66710 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 20122 0.9 0.04523
Target:  5'- ---cCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aagaGCUUUUCGCUCCAGCCGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.