miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21258 3' -55.2 NC_004778.3 + 105645 1.02 0.009123
Target:  5'- aUGC-GCGACUCGACCAAUUCCCGCGCu -3'
miRNA:   3'- -ACGuCGCUGAGCUGGUUAAGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 83091 0.88 0.077256
Target:  5'- cUGUAGCGACUCGACCAGcUUgCGCGCc -3'
miRNA:   3'- -ACGUCGCUGAGCUGGUUaAGgGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 51248 0.74 0.486597
Target:  5'- uUGCAGC--CUCGACaug--CCCGCGCa -3'
miRNA:   3'- -ACGUCGcuGAGCUGguuaaGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 23876 0.74 0.490465
Target:  5'- cUGCAGaacucauugcuguuuUGACaguuUCGGCCAGUUUCUGCGCa -3'
miRNA:   3'- -ACGUC---------------GCUG----AGCUGGUUAAGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 105460 0.74 0.496295
Target:  5'- cGCAGCGGC-CGA-----UCCCGCGCc -3'
miRNA:   3'- aCGUCGCUGaGCUgguuaAGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 39211 0.74 0.506079
Target:  5'- cGCuaAGCGACUCGACCGccuggUUgCGCGUu -3'
miRNA:   3'- aCG--UCGCUGAGCUGGUua---AGgGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 102392 0.73 0.525888
Target:  5'- cGCAGCG-UggGcCCAAUUCCCGuCGCa -3'
miRNA:   3'- aCGUCGCuGagCuGGUUAAGGGC-GCG- -5'
21258 3' -55.2 NC_004778.3 + 121578 0.73 0.545983
Target:  5'- gGCGGCGACaCGGCCGAcgcgugCCUGCuGCu -3'
miRNA:   3'- aCGUCGCUGaGCUGGUUaa----GGGCG-CG- -5'
21258 3' -55.2 NC_004778.3 + 2395 0.73 0.556123
Target:  5'- cGCGGUGGC-CGACgug--CCCGCGCc -3'
miRNA:   3'- aCGUCGCUGaGCUGguuaaGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 13157 0.72 0.617858
Target:  5'- aUGCAGCGcCUCaaACCug--CCCGCGUg -3'
miRNA:   3'- -ACGUCGCuGAGc-UGGuuaaGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 48631 0.72 0.628231
Target:  5'- -aUAGCGACgCGACCGgccGUUgCCGCGUc -3'
miRNA:   3'- acGUCGCUGaGCUGGU---UAAgGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 82826 0.71 0.648976
Target:  5'- gUGUuuGGCGGCUUGGCg----CCCGCGCc -3'
miRNA:   3'- -ACG--UCGCUGAGCUGguuaaGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 60221 0.71 0.678939
Target:  5'- cGCAaacaaccGCGACUCGuccGCCGGUUCCUcgGCGg -3'
miRNA:   3'- aCGU-------CGCUGAGC---UGGUUAAGGG--CGCg -5'
21258 3' -55.2 NC_004778.3 + 14506 0.71 0.679968
Target:  5'- uUGCGGCGACgaGACCGuga--CGCGCg -3'
miRNA:   3'- -ACGUCGCUGagCUGGUuaaggGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 61466 0.71 0.69023
Target:  5'- cGCAGCGGCuugUCGGCCAAcaaauaCUgGUGCa -3'
miRNA:   3'- aCGUCGCUG---AGCUGGUUaa----GGgCGCG- -5'
21258 3' -55.2 NC_004778.3 + 42514 0.7 0.707556
Target:  5'- gUGguGUGACcgCGACCuuaaacuaacaaugUUCCGCGCg -3'
miRNA:   3'- -ACguCGCUGa-GCUGGuua-----------AGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 49467 0.7 0.710596
Target:  5'- gUGCGGCGcCgCGuCCAAUgaCCGCGCc -3'
miRNA:   3'- -ACGUCGCuGaGCuGGUUAagGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 4206 0.7 0.710596
Target:  5'- gGCAgGCG-CUCGGCCug--CCCGCcgGCg -3'
miRNA:   3'- aCGU-CGCuGAGCUGGuuaaGGGCG--CG- -5'
21258 3' -55.2 NC_004778.3 + 70010 0.7 0.710596
Target:  5'- gGCAGCGAC---GCC-AUUCUgGCGCg -3'
miRNA:   3'- aCGUCGCUGagcUGGuUAAGGgCGCG- -5'
21258 3' -55.2 NC_004778.3 + 52696 0.7 0.72068
Target:  5'- aUGCAGCGcaauuuguugaGCaCGAUUAAUUCCaugaGCGCg -3'
miRNA:   3'- -ACGUCGC-----------UGaGCUGGUUAAGGg---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.