miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21258 3' -55.2 NC_004778.3 + 27885 0.67 0.877679
Target:  5'- cGCGGCGGCgaguguguggCGGCCAgcgaacacaucAUUCCgcugaacaugagcgUGCGCa -3'
miRNA:   3'- aCGUCGCUGa---------GCUGGU-----------UAAGG--------------GCGCG- -5'
21258 3' -55.2 NC_004778.3 + 56703 0.69 0.779214
Target:  5'- cGCAGCGACcgcaCGAUCAAUguuaaCacaGCGCa -3'
miRNA:   3'- aCGUCGCUGa---GCUGGUUAag---Gg--CGCG- -5'
21258 3' -55.2 NC_004778.3 + 2534 0.68 0.806782
Target:  5'- gUGCAGCGuauuaaugcggGCggCGACCuuuAGUUgUCGCGCa -3'
miRNA:   3'- -ACGUCGC-----------UGa-GCUGG---UUAAgGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 63694 0.68 0.806782
Target:  5'- gUGCAGCG---CGuCCAGUUCCgGCGa -3'
miRNA:   3'- -ACGUCGCugaGCuGGUUAAGGgCGCg -5'
21258 3' -55.2 NC_004778.3 + 107954 0.68 0.806782
Target:  5'- gGCuGC-ACUCGGCCucg-CCCGaCGCc -3'
miRNA:   3'- aCGuCGcUGAGCUGGuuaaGGGC-GCG- -5'
21258 3' -55.2 NC_004778.3 + 81728 0.68 0.824362
Target:  5'- aGUAGCGGCgccugCGAUa---UCCgGCGCg -3'
miRNA:   3'- aCGUCGCUGa----GCUGguuaAGGgCGCG- -5'
21258 3' -55.2 NC_004778.3 + 74283 0.68 0.832887
Target:  5'- aGCAGCGuCUUguauggcacgaGGCCGGUcugcggCUCGCGCu -3'
miRNA:   3'- aCGUCGCuGAG-----------CUGGUUAa-----GGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 40511 0.68 0.832887
Target:  5'- uUGCGGCGcUUCGACg----CCgGCGCg -3'
miRNA:   3'- -ACGUCGCuGAGCUGguuaaGGgCGCG- -5'
21258 3' -55.2 NC_004778.3 + 38151 0.68 0.838743
Target:  5'- cGCuGCGccGCUCGACaccuccacgcuaCCCGCGCc -3'
miRNA:   3'- aCGuCGC--UGAGCUGguuaa-------GGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 50213 0.69 0.779214
Target:  5'- gGCAGUGGCgcgCGACgGucaCCaCGCGCc -3'
miRNA:   3'- aCGUCGCUGa--GCUGgUuaaGG-GCGCG- -5'
21258 3' -55.2 NC_004778.3 + 52696 0.7 0.72068
Target:  5'- aUGCAGCGcaauuuguugaGCaCGAUUAAUUCCaugaGCGCg -3'
miRNA:   3'- -ACGUCGC-----------UGaGCUGGUUAAGGg---CGCG- -5'
21258 3' -55.2 NC_004778.3 + 70010 0.7 0.710596
Target:  5'- gGCAGCGAC---GCC-AUUCUgGCGCg -3'
miRNA:   3'- aCGUCGCUGagcUGGuUAAGGgCGCG- -5'
21258 3' -55.2 NC_004778.3 + 51248 0.74 0.486597
Target:  5'- uUGCAGC--CUCGACaug--CCCGCGCa -3'
miRNA:   3'- -ACGUCGcuGAGCUGguuaaGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 105460 0.74 0.496295
Target:  5'- cGCAGCGGC-CGA-----UCCCGCGCc -3'
miRNA:   3'- aCGUCGCUGaGCUgguuaAGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 39211 0.74 0.506079
Target:  5'- cGCuaAGCGACUCGACCGccuggUUgCGCGUu -3'
miRNA:   3'- aCG--UCGCUGAGCUGGUua---AGgGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 102392 0.73 0.525888
Target:  5'- cGCAGCG-UggGcCCAAUUCCCGuCGCa -3'
miRNA:   3'- aCGUCGCuGagCuGGUUAAGGGC-GCG- -5'
21258 3' -55.2 NC_004778.3 + 2395 0.73 0.556123
Target:  5'- cGCGGUGGC-CGACgug--CCCGCGCc -3'
miRNA:   3'- aCGUCGCUGaGCUGguuaaGGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 48631 0.72 0.628231
Target:  5'- -aUAGCGACgCGACCGgccGUUgCCGCGUc -3'
miRNA:   3'- acGUCGCUGaGCUGGU---UAAgGGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 14506 0.71 0.679968
Target:  5'- uUGCGGCGACgaGACCGuga--CGCGCg -3'
miRNA:   3'- -ACGUCGCUGagCUGGUuaaggGCGCG- -5'
21258 3' -55.2 NC_004778.3 + 61466 0.71 0.69023
Target:  5'- cGCAGCGGCuugUCGGCCAAcaaauaCUgGUGCa -3'
miRNA:   3'- aCGUCGCUG---AGCUGGUUaa----GGgCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.