Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21269 | 3' | -47.5 | NC_004778.3 | + | 19942 | 0.8 | 0.653414 |
Target: 5'- gCACGUUaaagAUAGCACUUGUUUUUCGAu -3' miRNA: 3'- -GUGCAGa---UAUCGUGAGCGAAAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24227 | 0.8 | 0.653414 |
Target: 5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24029 | 0.8 | 0.653414 |
Target: 5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 23832 | 0.8 | 0.653414 |
Target: 5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 125000 | 0.81 | 0.609467 |
Target: 5'- gCAUGUCUGaGGCAUUCGUUUUUCGGa -3' miRNA: 3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99443 | 0.81 | 0.587573 |
Target: 5'- gCACGUCUAaaaaUAGCACaUGCUUUUCGAc -3' miRNA: 3'- -GUGCAGAU----AUCGUGaGCGAAAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24095 | 0.82 | 0.523036 |
Target: 5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24294 | 0.82 | 0.523036 |
Target: 5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 23898 | 0.82 | 0.523036 |
Target: 5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122862 | 0.83 | 0.502105 |
Target: 5'- aCGCaGUCUAaagaUAGCACUUGUUUUUCGAGa -3' miRNA: 3'- -GUG-CAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 125062 | 0.83 | 0.481548 |
Target: 5'- gCAUGUCUGaGGUACUCGUUUUUCGAa -3' miRNA: 3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 124940 | 0.83 | 0.481548 |
Target: 5'- gCAUGUCUGaGGUACUCGUUUUUCGAa -3' miRNA: 3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99614 | 0.84 | 0.461408 |
Target: 5'- gCACGUCUAaaaaUAaCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUcGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 67011 | 0.86 | 0.351004 |
Target: 5'- gACGcCUAaagaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- gUGCaGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 66686 | 0.88 | 0.288514 |
Target: 5'- gCACGUCUAaagaUAGCACUCGCUUUUCa-- -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGcuc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99680 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99811 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99877 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99746 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 20008 | 0.92 | 0.170767 |
Target: 5'- gCACGUUUAaagaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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