miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 3' -47.5 NC_004778.3 + 24161 0.75 0.878386
Target:  5'- gCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5'
21269 3' -47.5 NC_004778.3 + 24226 0.72 0.95527
Target:  5'- uGCGUC---AGCGCcgaccgCGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24227 0.8 0.653414
Target:  5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24292 0.66 0.999609
Target:  5'- uGCGUC---AGCGCcgaccUCGCgUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGaAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24294 0.82 0.523036
Target:  5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24360 0.75 0.870603
Target:  5'- cCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5'
21269 3' -47.5 NC_004778.3 + 31580 0.77 0.780555
Target:  5'- uGCGUCUAUaaAGCGCUCGCUaugUUUCa-- -3'
miRNA:   3'- gUGCAGAUA--UCGUGAGCGA---AAAGcuc -5'
21269 3' -47.5 NC_004778.3 + 34462 0.69 0.992283
Target:  5'- gCGCGUCgaggAGCGCacCGCgg-UCGAGa -3'
miRNA:   3'- -GUGCAGaua-UCGUGa-GCGaaaAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 42798 0.68 0.996476
Target:  5'- aGCGUCUu--GCACUCGUgcaccgUCGGc -3'
miRNA:   3'- gUGCAGAuauCGUGAGCGaaa---AGCUc -5'
21269 3' -47.5 NC_004778.3 + 66424 0.74 0.900192
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66555 0.72 0.959293
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66621 1 0.055089
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66621 0.75 0.862574
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66686 0.88 0.288514
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCa-- -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGcuc -5'
21269 3' -47.5 NC_004778.3 + 66687 0.75 0.862574
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66751 1 0.055089
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66817 0.94 0.126105
Target:  5'- gCACGUCcaaagAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGa----UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66883 0.94 0.126105
Target:  5'- gCACGUCcaaagAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGa----UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66946 0.8 0.664377
Target:  5'- gCACGUaagAUAGCACUCGUUUUUCGc- -3'
miRNA:   3'- -GUGCAga-UAUCGUGAGCGAAAAGCuc -5'
21269 3' -47.5 NC_004778.3 + 67011 0.86 0.351004
Target:  5'- gACGcCUAaagaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCaGAU----AUCGUGAGCGAAAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.