miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 3' -47.5 NC_004778.3 + 5738 0.7 0.986651
Target:  5'- gACGg--GUGGCGCUCGUcUUUCGGa -3'
miRNA:   3'- gUGCagaUAUCGUGAGCGaAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 11343 0.66 0.99925
Target:  5'- cCACGUCgugAUGGCuguugaugcauucguCguaCGCUUUUUGAGg -3'
miRNA:   3'- -GUGCAGa--UAUCGu--------------Ga--GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 12207 0.67 0.997768
Target:  5'- gCACGUCUGaacuggacaaauGCACUCGCgcaacagaccgUUUCGAu -3'
miRNA:   3'- -GUGCAGAUau----------CGUGAGCGa----------AAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 19681 0.72 0.950986
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19747 0.72 0.959293
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19812 0.75 0.862574
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19877 1 0.055089
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19912 0.75 0.862574
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19942 0.8 0.653414
Target:  5'- gCACGUUaaagAUAGCACUUGUUUUUCGAu -3'
miRNA:   3'- -GUGCAGa---UAUCGUGAGCGAAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 19967 0.72 0.959293
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 20008 0.92 0.170767
Target:  5'- gCACGUUUAaagaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 20033 0.73 0.925511
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGGGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 20164 0.94 0.126105
Target:  5'- gCACGUCcaaagAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGa----UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 23832 0.8 0.653414
Target:  5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5'
21269 3' -47.5 NC_004778.3 + 23898 0.82 0.523036
Target:  5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5'
21269 3' -47.5 NC_004778.3 + 23963 0.75 0.878386
Target:  5'- gCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5'
21269 3' -47.5 NC_004778.3 + 24028 0.72 0.95527
Target:  5'- uGCGUC---AGCGCcgaccgCGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24029 0.8 0.653414
Target:  5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24094 0.66 0.999609
Target:  5'- uGCGUC---AGCGCcgaccUCGCgUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGaAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24095 0.82 0.523036
Target:  5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.