miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 3' -47.5 NC_004778.3 + 122685 1.1 0.013814
Target:  5'- gCACGUCUAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAUAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122747 1.1 0.013814
Target:  5'- gCACGUCUAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAUAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122795 1.05 0.029801
Target:  5'- gCACGUUUAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAUAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66751 1 0.055089
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66621 1 0.055089
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19877 1 0.055089
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66817 0.94 0.126105
Target:  5'- gCACGUCcaaagAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGa----UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66883 0.94 0.126105
Target:  5'- gCACGUCcaaagAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGa----UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 20164 0.94 0.126105
Target:  5'- gCACGUCcaaagAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGa----UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99943 0.94 0.137084
Target:  5'- gCAUGUCUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99274 0.92 0.161709
Target:  5'- gCACGUauaagAUAGCGCUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAga---UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 20008 0.92 0.170767
Target:  5'- gCACGUUUAaagaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99877 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99811 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99746 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99680 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66686 0.88 0.288514
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCa-- -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGcuc -5'
21269 3' -47.5 NC_004778.3 + 67011 0.86 0.351004
Target:  5'- gACGcCUAaagaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCaGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99614 0.84 0.461408
Target:  5'- gCACGUCUAaaaaUAaCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUcGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 124940 0.83 0.481548
Target:  5'- gCAUGUCUGaGGUACUCGUUUUUCGAa -3'
miRNA:   3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.