miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 3' -47.5 NC_004778.3 + 24161 0.75 0.878386
Target:  5'- gCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5'
21269 3' -47.5 NC_004778.3 + 24029 0.8 0.653414
Target:  5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24227 0.8 0.653414
Target:  5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19812 0.75 0.862574
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19912 0.75 0.862574
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66621 0.75 0.862574
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66687 0.75 0.862574
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24360 0.75 0.870603
Target:  5'- cCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5'
21269 3' -47.5 NC_004778.3 + 23963 0.75 0.878386
Target:  5'- gCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5'
21269 3' -47.5 NC_004778.3 + 23832 0.8 0.653414
Target:  5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99443 0.81 0.587573
Target:  5'- gCACGUCUAaaaaUAGCACaUGCUUUUCGAc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGaGCGAAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 24294 0.82 0.523036
Target:  5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99274 0.92 0.161709
Target:  5'- gCACGUauaagAUAGCGCUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAga---UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99680 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99746 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99811 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99877 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99614 0.84 0.461408
Target:  5'- gCACGUCUAaaaaUAaCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUcGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 23898 0.82 0.523036
Target:  5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24095 0.82 0.523036
Target:  5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.