Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21269 | 3' | -47.5 | NC_004778.3 | + | 23963 | 0.75 | 0.878386 |
Target: 5'- gCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 23898 | 0.82 | 0.523036 |
Target: 5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99614 | 0.84 | 0.461408 |
Target: 5'- gCACGUCUAaaaaUAaCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUcGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99877 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99811 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99746 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99680 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99274 | 0.92 | 0.161709 |
Target: 5'- gCACGUauaagAUAGCGCUCGCUUUUCGAGa -3' miRNA: 3'- -GUGCAga---UAUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99943 | 0.94 | 0.137084 |
Target: 5'- gCAUGUCUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24095 | 0.82 | 0.523036 |
Target: 5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24294 | 0.82 | 0.523036 |
Target: 5'- gCACGUCUcaaauUGGCAUUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99443 | 0.81 | 0.587573 |
Target: 5'- gCACGUCUAaaaaUAGCACaUGCUUUUCGAc -3' miRNA: 3'- -GUGCAGAU----AUCGUGaGCGAAAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24360 | 0.75 | 0.870603 |
Target: 5'- cCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 66687 | 0.75 | 0.862574 |
Target: 5'- uGCGUC---GGCGCcgaccUCGCUUUUCGAGa -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 66621 | 0.75 | 0.862574 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 19912 | 0.75 | 0.862574 |
Target: 5'- uGCGUC---GGCGCcgaccUCGCUUUUCGAGa -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 19812 | 0.75 | 0.862574 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24227 | 0.8 | 0.653414 |
Target: 5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24029 | 0.8 | 0.653414 |
Target: 5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 23832 | 0.8 | 0.653414 |
Target: 5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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