miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 5' -56 NC_004778.3 + 122565 1.07 0.003105
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 66714 1.07 0.003105
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 122467 1.07 0.003105
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 19905 1.07 0.003105
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 20126 1.07 0.003105
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 122823 1.07 0.003105
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 122713 1.07 0.003105
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 19839 1.03 0.006112
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACu -5'
21269 5' -56 NC_004778.3 + 66583 1.01 0.007238
Target:  5'- gUACUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 99357 0.99 0.011042
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 19968 0.96 0.016827
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 66777 0.96 0.016827
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 23804 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 24001 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 24199 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 24133 0.94 0.022898
Target:  5'- gUACUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 24332 0.94 0.022898
Target:  5'- gUACUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 20190 0.93 0.025605
Target:  5'- -uCCCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 122973 0.93 0.025605
Target:  5'- gUACCCGAAAAGCGGGGUUGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 122649 0.93 0.02633
Target:  5'- -uCCCGAAAAGCGAGGUCGGCGCUu- -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.