miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 5' -56 NC_004778.3 + 4530 0.67 0.827051
Target:  5'- cUGCCCGAcGAuGCu-GGUCGGCGUg-- -3'
miRNA:   3'- -AUGGGCUuUU-CGcuCCAGCCGCGacu -5'
21269 5' -56 NC_004778.3 + 12895 0.67 0.835541
Target:  5'- cGCCCGAc-AGCGGaaUCGGCGCg-- -3'
miRNA:   3'- aUGGGCUuuUCGCUccAGCCGCGacu -5'
21269 5' -56 NC_004778.3 + 19839 1.03 0.006112
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACu -5'
21269 5' -56 NC_004778.3 + 19847 0.74 0.435893
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuaaacGugcGUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU---------------C---CAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 19905 1.07 0.003105
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 19968 0.96 0.016827
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 20002 0.74 0.43134
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU-----------CC-------AGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 20043 0.67 0.799602
Target:  5'- cGCaCGuAAGAuagcacuGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- aUGgGC-UUUU-------CGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 20068 0.88 0.058799
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 20126 1.07 0.003105
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 20190 0.93 0.025605
Target:  5'- -uCCCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 23804 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 23870 0.93 0.028628
Target:  5'- gUACUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCuCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 23936 0.85 0.090881
Target:  5'- gUACUCGAAAcGCGAGG-CGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCaGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 24001 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 24067 0.93 0.028628
Target:  5'- gUACUCGAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCuCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 24133 0.94 0.022898
Target:  5'- gUACUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 24199 0.94 0.022267
Target:  5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 24265 0.86 0.081568
Target:  5'- gUACUCGaAAAAGCGcGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGC-UUUUCGCuCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 24332 0.94 0.022898
Target:  5'- gUACUCGAAAcGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUuCGCUCCAGCCGCGACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.