Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21270 | 3' | -46.3 | NC_004778.3 | + | 99771 | 0.68 | 0.999333 |
Target: 5'- --cCGAAAAGCGAGUGUuauuUUUAGACGu -3' miRNA: 3'- agaGCUUUUUGCUUACG----GAGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 100101 | 0.74 | 0.943611 |
Target: 5'- --cCGAAAAGCGAGUGCUauuuUUAGACAu -3' miRNA: 3'- agaGCUUUUUGCUUACGG----AGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 122399 | 0.67 | 0.999576 |
Target: 5'- aCUCGAAAAGCGAGgucggcGCCgucuaaAGAUAa -3' miRNA: 3'- aGAGCUUUUUGCUUa-----CGGag----UCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 122529 | 0.86 | 0.412941 |
Target: 5'- uUCUCGAAAAGCGAGUGCUaUAGACGu -3' miRNA: 3'- -AGAGCUUUUUGCUUACGGaGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 122591 | 0.86 | 0.412941 |
Target: 5'- uUCUCGAAAAGCGAGUGCUaUAGACGu -3' miRNA: 3'- -AGAGCUUUUUGCUUACGGaGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 122639 | 0.76 | 0.902609 |
Target: 5'- uUCUCGAAAAGCGAGUGCUauaaacgugcgUCAG-CGc -3' miRNA: 3'- -AGAGCUUUUUGCUUACGG-----------AGUCuGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 122701 | 0.7 | 0.992875 |
Target: 5'- uUCUCGAAAAACaAGUGCUaucuUUAGACu- -3' miRNA: 3'- -AGAGCUUUUUGcUUACGG----AGUCUGuc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 122895 | 1.12 | 0.014693 |
Target: 5'- uUCUCGAAAAACGAAUGCCUCAGACAGg -3' miRNA: 3'- -AGAGCUUUUUGCUUACGGAGUCUGUC- -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 124060 | 0.69 | 0.997766 |
Target: 5'- -aUCGGAGGACGAggcuGUGCCUCuuccGCAa -3' miRNA: 3'- agAGCUUUUUGCU----UACGGAGuc--UGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 124783 | 0.86 | 0.412941 |
Target: 5'- uUUUCGAAAAACGAGUaCCUCAGACAu -3' miRNA: 3'- -AGAGCUUUUUGCUUAcGGAGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 124844 | 0.95 | 0.139626 |
Target: 5'- uUC-CGAAAAACGAAUGCCUCAGACAu -3' miRNA: 3'- -AGaGCUUUUUGCUUACGGAGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 124905 | 0.86 | 0.412941 |
Target: 5'- uUUUCGAAAAACGAGUaCCUCAGACAu -3' miRNA: 3'- -AGAGCUUUUUGCUUAcGGAGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 125026 | 0.67 | 0.999614 |
Target: 5'- gUUCGGAAAGCGGggucggcgaugacgcAUGUCUgAGGCAu -3' miRNA: 3'- aGAGCUUUUUGCU---------------UACGGAgUCUGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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