miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21270 5' -40.3 NC_004778.3 + 99880 0.67 1
Target:  5'- uGUUUAAAaAUAGCACUcGcUUUUCGGg -3'
miRNA:   3'- -CAGAUUUcUAUCGUGAaCaAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 85875 0.69 1
Target:  5'- cGUCUGAcGAUGGCGCUaauaacucGUUgUUCGGc -3'
miRNA:   3'- -CAGAUUuCUAUCGUGAa-------CAAaAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 125059 0.69 1
Target:  5'- uGUCUGA----GGUACUcGUUUUUCGAa -3'
miRNA:   3'- -CAGAUUucuaUCGUGAaCAAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 124937 0.69 1
Target:  5'- uGUCUGA----GGUACUcGUUUUUCGAa -3'
miRNA:   3'- -CAGAUUucuaUCGUGAaCAAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 124997 0.66 1
Target:  5'- uGUCUGA----GGCAUUcGUUUUUCGGa -3'
miRNA:   3'- -CAGAUUucuaUCGUGAaCAAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 84212 0.66 1
Target:  5'- uUUUAAAGugcGGCACUUGUUUgauaaaUUCGu -3'
miRNA:   3'- cAGAUUUCua-UCGUGAACAAA------AAGCu -5'
21270 5' -40.3 NC_004778.3 + 122742 0.67 1
Target:  5'- uGUCUGA----GGCA-UUGUUUUUCGAg -3'
miRNA:   3'- -CAGAUUucuaUCGUgAACAAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 99814 0.67 1
Target:  5'- uGUUUAAAaAUAGCACUcGcUUUUCGGg -3'
miRNA:   3'- -CAGAUUUcUAUCGUGAaCaAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 99749 0.67 1
Target:  5'- uGUUUAAAaAUAGCACUcGcUUUUCGGg -3'
miRNA:   3'- -CAGAUUUcUAUCGUGAaCaAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 99683 0.67 1
Target:  5'- uGUUUAAAaAUAGCACUcGcUUUUCGGg -3'
miRNA:   3'- -CAGAUUUcUAUCGUGAaCaAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 99277 0.7 0.999999
Target:  5'- cGUau-AAGAUAGCGCUcGcUUUUCGAg -3'
miRNA:   3'- -CAgauUUCUAUCGUGAaCaAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 24363 0.73 0.999963
Target:  5'- uGUCUAAAaAUAGCACUcGUUUUaCGGc -3'
miRNA:   3'- -CAGAUUUcUAUCGUGAaCAAAAaGCU- -5'
21270 5' -40.3 NC_004778.3 + 24164 0.73 0.999963
Target:  5'- uGUCUAAAaAUAGCACUcGUUUUaCGGc -3'
miRNA:   3'- -CAGAUUUcUAUCGUGAaCAAAAaGCU- -5'
21270 5' -40.3 NC_004778.3 + 23966 0.73 0.999963
Target:  5'- uGUCUAAAaAUAGCACUcGUUUUaCGGc -3'
miRNA:   3'- -CAGAUUUcUAUCGUGAaCAAAAaGCU- -5'
21270 5' -40.3 NC_004778.3 + 99946 0.74 0.999835
Target:  5'- uGUCUAAAaAUAGCACUcGcUUUUCGGg -3'
miRNA:   3'- -CAGAUUUcUAUCGUGAaCaAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 66941 0.74 0.999835
Target:  5'- ----uAAGAUAGCACUcGUUUUUCGc -3'
miRNA:   3'- cagauUUCUAUCGUGAaCAAAAAGCu -5'
21270 5' -40.3 NC_004778.3 + 99446 0.76 0.998559
Target:  5'- cGUCUAAAaAUAGCACaUGcUUUUCGAc -3'
miRNA:   3'- -CAGAUUUcUAUCGUGaACaAAAAGCU- -5'
21270 5' -40.3 NC_004778.3 + 122377 0.77 0.996229
Target:  5'- cGUCUAAAGAUAaCACUaGUUUUUCa- -3'
miRNA:   3'- -CAGAUUUCUAUcGUGAaCAAAAAGcu -5'
21270 5' -40.3 NC_004778.3 + 99388 0.78 0.992656
Target:  5'- cGUCUAAAGAUAaC-CUUGUUUUUCGu -3'
miRNA:   3'- -CAGAUUUCUAUcGuGAACAAAAAGCu -5'
21270 5' -40.3 NC_004778.3 + 66814 0.79 0.990059
Target:  5'- cGUCcAAAGAUAGCACUcGcUUUUCGGg -3'
miRNA:   3'- -CAGaUUUCUAUCGUGAaCaAAAAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.