Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21273 | 3' | -55.7 | NC_004778.3 | + | 81127 | 0.66 | 0.882217 |
Target: 5'- --uUUGCGaGCAccGGCCACCUGUUu -3' miRNA: 3'- aacAGCGCgUGUaaCCGGUGGACAGc -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 14514 | 0.66 | 0.877862 |
Target: 5'- cUGUCGCGCGCGUUGcagcgcauuucgaaCCGCCUcgagccGUCc -3' miRNA: 3'- aACAGCGCGUGUAACc-------------GGUGGA------CAGc -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 23698 | 0.66 | 0.851659 |
Target: 5'- -aG-CGUGCGCAgaaacUGGCCGaaaCUGUCa -3' miRNA: 3'- aaCaGCGCGUGUa----ACCGGUg--GACAGc -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 2552 | 0.67 | 0.835099 |
Target: 5'- -cGUCGgGCGCGggcacgucGGCCACCgcgCGg -3' miRNA: 3'- aaCAGCgCGUGUaa------CCGGUGGacaGC- -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 9432 | 0.67 | 0.826524 |
Target: 5'- gUGgCGCGCACGUUGGacaCgGCC-GUCGu -3' miRNA: 3'- aACaGCGCGUGUAACC---GgUGGaCAGC- -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 49530 | 0.67 | 0.826524 |
Target: 5'- gUUGUCGC-CAUuguUUGGCCACCaaaaGUUGc -3' miRNA: 3'- -AACAGCGcGUGu--AACCGGUGGa---CAGC- -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 64941 | 0.67 | 0.817763 |
Target: 5'- -cGUCGCccgaacaaGCAUAUUGGCCAUCgg-CGc -3' miRNA: 3'- aaCAGCG--------CGUGUAACCGGUGGacaGC- -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 21426 | 0.67 | 0.817763 |
Target: 5'- --cUCGCuGCGCAUcacgGGCCAUCUGcUCa -3' miRNA: 3'- aacAGCG-CGUGUAa---CCGGUGGAC-AGc -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 48870 | 0.67 | 0.812422 |
Target: 5'- -gGUCGCGCACGgccUUGGCggcacgcgcguaucgCACUcGUCGu -3' miRNA: 3'- aaCAGCGCGUGU---AACCG---------------GUGGaCAGC- -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 112212 | 0.67 | 0.808825 |
Target: 5'- --cUCGCGCAUAgcGGCCGCgCgGUCc -3' miRNA: 3'- aacAGCGCGUGUaaCCGGUG-GaCAGc -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 35073 | 0.67 | 0.799719 |
Target: 5'- -cGcCGCGCACAaUGGCCaugcGCUUG-CGg -3' miRNA: 3'- aaCaGCGCGUGUaACCGG----UGGACaGC- -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 116022 | 0.68 | 0.790453 |
Target: 5'- uUUGUCGCGUACAcggGGgUGCCUGg-- -3' miRNA: 3'- -AACAGCGCGUGUaa-CCgGUGGACagc -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 69955 | 0.68 | 0.762768 |
Target: 5'- gUGUCGCGaCACGcggucgcgaggcacGGCCGCCUcUCGg -3' miRNA: 3'- aACAGCGC-GUGUaa------------CCGGUGGAcAGC- -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 107675 | 0.68 | 0.750998 |
Target: 5'- gUGUCGCGCgacgaaaccuugcGCGUggaGGCCGCCacgcgcgGUCa -3' miRNA: 3'- aACAGCGCG-------------UGUAa--CCGGUGGa------CAGc -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 111282 | 0.69 | 0.732047 |
Target: 5'- cUGUCGCGCACGUuucUGaCCGCCUa--- -3' miRNA: 3'- aACAGCGCGUGUA---ACcGGUGGAcagc -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 27796 | 0.69 | 0.711744 |
Target: 5'- ---cCGCGCugcaccGCAUgcacgGGCCGCUUGUCGc -3' miRNA: 3'- aacaGCGCG------UGUAa----CCGGUGGACAGC- -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 85219 | 0.69 | 0.701481 |
Target: 5'- uUUGUUGCGCuGCAuUUGaGCCACCcGUUGu -3' miRNA: 3'- -AACAGCGCG-UGU-AAC-CGGUGGaCAGC- -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 49752 | 0.69 | 0.701481 |
Target: 5'- -aGUgCGCuCGCAc-GGCUACCUGUCGg -3' miRNA: 3'- aaCA-GCGcGUGUaaCCGGUGGACAGC- -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 45194 | 0.69 | 0.691156 |
Target: 5'- -cGUCgGCGCGCAacuguUUGGCCACCa---- -3' miRNA: 3'- aaCAG-CGCGUGU-----AACCGGUGGacagc -5' |
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21273 | 3' | -55.7 | NC_004778.3 | + | 32270 | 0.7 | 0.659911 |
Target: 5'- ---cCGCGCACGcUGGCCggcggcGCCgUGUCGg -3' miRNA: 3'- aacaGCGCGUGUaACCGG------UGG-ACAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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