miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21273 5' -55.6 NC_004778.3 + 107993 0.66 0.909745
Target:  5'- -cCGACGGGu-CGUgggUGCCCGUGGAg -3'
miRNA:   3'- uaGCUGUCUuuGCAgu-GCGGGCGCCU- -5'
21273 5' -55.6 NC_004778.3 + 89836 0.66 0.903515
Target:  5'- -gCGAau-AAACGUCACGUuuucguaggcugCCGCGGAg -3'
miRNA:   3'- uaGCUgucUUUGCAGUGCG------------GGCGCCU- -5'
21273 5' -55.6 NC_004778.3 + 38655 0.66 0.890342
Target:  5'- cAUgGACGccGAAcGCGUCGCGUuaGCGGAu -3'
miRNA:   3'- -UAgCUGU--CUU-UGCAGUGCGggCGCCU- -5'
21273 5' -55.6 NC_004778.3 + 107758 0.66 0.883404
Target:  5'- -cCG-CAGcaccGCGUCGCGCUCGuCGGGg -3'
miRNA:   3'- uaGCuGUCuu--UGCAGUGCGGGC-GCCU- -5'
21273 5' -55.6 NC_004778.3 + 39321 0.66 0.883404
Target:  5'- -gCGACGcGGugGUCguGCGCaCCGCGGu -3'
miRNA:   3'- uaGCUGUcUUugCAG--UGCG-GGCGCCu -5'
21273 5' -55.6 NC_004778.3 + 85522 0.66 0.876239
Target:  5'- -gCGGCGGcGAUGUCAUGgaCGCGGGc -3'
miRNA:   3'- uaGCUGUCuUUGCAGUGCggGCGCCU- -5'
21273 5' -55.6 NC_004778.3 + 85492 0.66 0.876239
Target:  5'- -gCGGCGGcGAUGUCAUGgaCGCGGGc -3'
miRNA:   3'- uaGCUGUCuUUGCAGUGCggGCGCCU- -5'
21273 5' -55.6 NC_004778.3 + 2408 0.67 0.868851
Target:  5'- -cCGGaaaccuGAAGCGgcgUACGUCCGCGGGc -3'
miRNA:   3'- uaGCUgu----CUUUGCa--GUGCGGGCGCCU- -5'
21273 5' -55.6 NC_004778.3 + 33521 0.67 0.861245
Target:  5'- --aGACGGc-GCGUCGuccgcgacguCGCCCGCGGc -3'
miRNA:   3'- uagCUGUCuuUGCAGU----------GCGGGCGCCu -5'
21273 5' -55.6 NC_004778.3 + 5907 0.67 0.853428
Target:  5'- aGUCGuaGCAGucAACGUCGagGUCCGCGGc -3'
miRNA:   3'- -UAGC--UGUCu-UUGCAGUg-CGGGCGCCu -5'
21273 5' -55.6 NC_004778.3 + 71387 0.67 0.845405
Target:  5'- uGUCGGCGGggGCGUaggcgagggUGUCgGCGGGg -3'
miRNA:   3'- -UAGCUGUCuuUGCAgu-------GCGGgCGCCU- -5'
21273 5' -55.6 NC_004778.3 + 103409 0.67 0.845405
Target:  5'- uUUGGCGGAcACGUCGugcCGCCauguugGCGGAc -3'
miRNA:   3'- uAGCUGUCUuUGCAGU---GCGGg-----CGCCU- -5'
21273 5' -55.6 NC_004778.3 + 10902 0.67 0.845405
Target:  5'- -aCGGCGGc-GCG-CACacggcaGCCCGCGGAg -3'
miRNA:   3'- uaGCUGUCuuUGCaGUG------CGGGCGCCU- -5'
21273 5' -55.6 NC_004778.3 + 71435 0.67 0.845405
Target:  5'- uGUCGGCGGggGCGUaggcgagggUGUCgGCGGGg -3'
miRNA:   3'- -UAGCUGUCuuUGCAgu-------GCGGgCGCCU- -5'
21273 5' -55.6 NC_004778.3 + 78023 0.67 0.837184
Target:  5'- cGUUGACcguacGGAugGUCGCGCUCGUGa- -3'
miRNA:   3'- -UAGCUGu----CUUugCAGUGCGGGCGCcu -5'
21273 5' -55.6 NC_004778.3 + 71339 0.68 0.820178
Target:  5'- uGUCGGCGGGAGCGUaggcgagggUGUCgGCGGGa -3'
miRNA:   3'- -UAGCUGUCUUUGCAgu-------GCGGgCGCCU- -5'
21273 5' -55.6 NC_004778.3 + 128760 0.69 0.755608
Target:  5'- --aGGCGGAGGCGgaggUAUGCCCGCcGAc -3'
miRNA:   3'- uagCUGUCUUUGCa---GUGCGGGCGcCU- -5'
21273 5' -55.6 NC_004778.3 + 128679 0.69 0.755608
Target:  5'- --aGGCGGAGGCGgaggUAUGCCCGCcGAc -3'
miRNA:   3'- uagCUGUCUUUGCa---GUGCGGGCGcCU- -5'
21273 5' -55.6 NC_004778.3 + 39145 0.7 0.695798
Target:  5'- gGUCGuCGGuGGACGUUACGaCCGCGGu -3'
miRNA:   3'- -UAGCuGUC-UUUGCAGUGCgGGCGCCu -5'
21273 5' -55.6 NC_004778.3 + 21267 0.7 0.685584
Target:  5'- cGUCGGCgaucuGGGcAACGUC-CGCuCCGCGGGc -3'
miRNA:   3'- -UAGCUG-----UCU-UUGCAGuGCG-GGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.