Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21273 | 5' | -55.6 | NC_004778.3 | + | 107993 | 0.66 | 0.909745 |
Target: 5'- -cCGACGGGu-CGUgggUGCCCGUGGAg -3' miRNA: 3'- uaGCUGUCUuuGCAgu-GCGGGCGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 89836 | 0.66 | 0.903515 |
Target: 5'- -gCGAau-AAACGUCACGUuuucguaggcugCCGCGGAg -3' miRNA: 3'- uaGCUgucUUUGCAGUGCG------------GGCGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 38655 | 0.66 | 0.890342 |
Target: 5'- cAUgGACGccGAAcGCGUCGCGUuaGCGGAu -3' miRNA: 3'- -UAgCUGU--CUU-UGCAGUGCGggCGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 39321 | 0.66 | 0.883404 |
Target: 5'- -gCGACGcGGugGUCguGCGCaCCGCGGu -3' miRNA: 3'- uaGCUGUcUUugCAG--UGCG-GGCGCCu -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 107758 | 0.66 | 0.883404 |
Target: 5'- -cCG-CAGcaccGCGUCGCGCUCGuCGGGg -3' miRNA: 3'- uaGCuGUCuu--UGCAGUGCGGGC-GCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 85522 | 0.66 | 0.876239 |
Target: 5'- -gCGGCGGcGAUGUCAUGgaCGCGGGc -3' miRNA: 3'- uaGCUGUCuUUGCAGUGCggGCGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 85492 | 0.66 | 0.876239 |
Target: 5'- -gCGGCGGcGAUGUCAUGgaCGCGGGc -3' miRNA: 3'- uaGCUGUCuUUGCAGUGCggGCGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 2408 | 0.67 | 0.868851 |
Target: 5'- -cCGGaaaccuGAAGCGgcgUACGUCCGCGGGc -3' miRNA: 3'- uaGCUgu----CUUUGCa--GUGCGGGCGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 33521 | 0.67 | 0.861245 |
Target: 5'- --aGACGGc-GCGUCGuccgcgacguCGCCCGCGGc -3' miRNA: 3'- uagCUGUCuuUGCAGU----------GCGGGCGCCu -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 5907 | 0.67 | 0.853428 |
Target: 5'- aGUCGuaGCAGucAACGUCGagGUCCGCGGc -3' miRNA: 3'- -UAGC--UGUCu-UUGCAGUg-CGGGCGCCu -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 103409 | 0.67 | 0.845405 |
Target: 5'- uUUGGCGGAcACGUCGugcCGCCauguugGCGGAc -3' miRNA: 3'- uAGCUGUCUuUGCAGU---GCGGg-----CGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 71435 | 0.67 | 0.845405 |
Target: 5'- uGUCGGCGGggGCGUaggcgagggUGUCgGCGGGg -3' miRNA: 3'- -UAGCUGUCuuUGCAgu-------GCGGgCGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 71387 | 0.67 | 0.845405 |
Target: 5'- uGUCGGCGGggGCGUaggcgagggUGUCgGCGGGg -3' miRNA: 3'- -UAGCUGUCuuUGCAgu-------GCGGgCGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 10902 | 0.67 | 0.845405 |
Target: 5'- -aCGGCGGc-GCG-CACacggcaGCCCGCGGAg -3' miRNA: 3'- uaGCUGUCuuUGCaGUG------CGGGCGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 78023 | 0.67 | 0.837184 |
Target: 5'- cGUUGACcguacGGAugGUCGCGCUCGUGa- -3' miRNA: 3'- -UAGCUGu----CUUugCAGUGCGGGCGCcu -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 71339 | 0.68 | 0.820178 |
Target: 5'- uGUCGGCGGGAGCGUaggcgagggUGUCgGCGGGa -3' miRNA: 3'- -UAGCUGUCUUUGCAgu-------GCGGgCGCCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 128679 | 0.69 | 0.755608 |
Target: 5'- --aGGCGGAGGCGgaggUAUGCCCGCcGAc -3' miRNA: 3'- uagCUGUCUUUGCa---GUGCGGGCGcCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 128760 | 0.69 | 0.755608 |
Target: 5'- --aGGCGGAGGCGgaggUAUGCCCGCcGAc -3' miRNA: 3'- uagCUGUCUUUGCa---GUGCGGGCGcCU- -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 39145 | 0.7 | 0.695798 |
Target: 5'- gGUCGuCGGuGGACGUUACGaCCGCGGu -3' miRNA: 3'- -UAGCuGUC-UUUGCAGUGCgGGCGCCu -5' |
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21273 | 5' | -55.6 | NC_004778.3 | + | 21267 | 0.7 | 0.685584 |
Target: 5'- cGUCGGCgaucuGGGcAACGUC-CGCuCCGCGGGc -3' miRNA: 3'- -UAGCUG-----UCU-UUGCAGuGCG-GGCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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