miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 122930 0.76 0.402532
Target:  5'- gCGUCAGCGCCGACUcCaCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGcGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99809 0.76 0.394027
Target:  5'- gCGcCAGCGCCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCaGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99667 0.77 0.36439
Target:  5'- gGUCGGCGCUGGCgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122698 0.77 0.35094
Target:  5'- gGUCGGCGCUGACgcacgucuauagcaCUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122760 0.77 0.35094
Target:  5'- gGUCGGCGCUGACgcacgucuauagcaCUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122808 0.77 0.35094
Target:  5'- gGUCGGCGCUGACgcacguuuauagcaCUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99601 0.78 0.318518
Target:  5'- gGUCGGCGCUGACgcaCgucuaaaaauaacacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99941 0.79 0.281062
Target:  5'- gCGUCAGCGUCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66491 0.8 0.237822
Target:  5'- gCGUCGGCGCCGAUC-CGUUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 124810 0.82 0.200291
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUa--- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5'
21283 3' -55.4 NC_004778.3 + 124932 0.82 0.200291
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUg--- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5'
21283 3' -55.4 NC_004778.3 + 19879 0.82 0.190556
Target:  5'- gCGUCGGCGCCGACCUCGCa------- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaaaagccc -5'
21283 3' -55.4 NC_004778.3 + 20021 0.82 0.187718
Target:  5'- gGUCGGCGCCGACgcaCguuuaaagauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66907 0.82 0.185846
Target:  5'- gCGUCAGgGCCGACCUUGCUUUUUa-- -3'
miRNA:   3'- -GCAGUCgCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 66896 0.82 0.185381
Target:  5'- gGUCGGCGCCGAcgcacguCCaaagauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCU-------GG-----------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66830 0.82 0.185381
Target:  5'- gGUCGGCGCCGAcgcacguCCaaagauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCU-------GG-----------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 20177 0.82 0.185381
Target:  5'- gGUCGGCGCCGAcgcacguCCaaagauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCU-------GG-----------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 67019 0.83 0.158478
Target:  5'- --aCGGCGCCGACgccuaaagauagcaCUCGCUUUUCGGGu -3'
miRNA:   3'- gcaGUCGCGGCUG--------------GAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99743 0.84 0.144151
Target:  5'- gCGUCAGCGCCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99573 0.84 0.136909
Target:  5'- gCGUgAGCGCCGACCUCGCUUUcCGa- -3'
miRNA:   3'- -GCAgUCGCGGCUGGAGCGAAAaGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.