miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 24357 0.91 0.051225
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5'
21283 3' -55.4 NC_004778.3 + 24424 0.88 0.076516
Target:  5'- gCGUCAGCGCCGACCgCGCUUUUucgaguaCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAA-------GCCC- -5'
21283 3' -55.4 NC_004778.3 + 24489 0.91 0.054076
Target:  5'- gGUCAGCGCCGACCUCGCgUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUGGAGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24556 0.76 0.411153
Target:  5'- gCGUCAaCGCCGACCgUGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUcGCGGCUGGaGCGAAAAGcCC- -5'
21283 3' -55.4 NC_004778.3 + 43961 0.66 0.930056
Target:  5'- --gUAGCGCUGAuCCUUGUg---CGGGu -3'
miRNA:   3'- gcaGUCGCGGCU-GGAGCGaaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 44159 0.71 0.694835
Target:  5'- gGUCAGCcguuaaauacccGCCGGCCgCGCg--UUGGGc -3'
miRNA:   3'- gCAGUCG------------CGGCUGGaGCGaaaAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 44474 0.7 0.754038
Target:  5'- uCG-CGGCGCCGcuCgUCGCUgg-CGGGc -3'
miRNA:   3'- -GCaGUCGCGGCu-GgAGCGAaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 48932 0.68 0.858948
Target:  5'- gGUCGGCGCaauuguaGAagcCCUCGCcca-CGGGg -3'
miRNA:   3'- gCAGUCGCGg------CU---GGAGCGaaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 49070 0.72 0.643967
Target:  5'- ----uGCGCCGACCUCGUguucgagUCGGa -3'
miRNA:   3'- gcaguCGCGGCUGGAGCGaaa----AGCCc -5'
21283 3' -55.4 NC_004778.3 + 49468 0.66 0.911669
Target:  5'- uGUgCGGCGCCGcguccaaugaccgcGCCgCGCUgUUCGGc -3'
miRNA:   3'- gCA-GUCGCGGC--------------UGGaGCGAaAAGCCc -5'
21283 3' -55.4 NC_004778.3 + 52984 0.74 0.49354
Target:  5'- -aUCAGCGCCGGCaUgGCg--UCGGGg -3'
miRNA:   3'- gcAGUCGCGGCUGgAgCGaaaAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 54242 0.67 0.881062
Target:  5'- uGUCGGCGCUuuggGACCgcgUCGCUUgcgUCGc- -3'
miRNA:   3'- gCAGUCGCGG----CUGG---AGCGAAa--AGCcc -5'
21283 3' -55.4 NC_004778.3 + 64778 0.66 0.919222
Target:  5'- --aCGGCGCCGaugGCCaauaUGCUUgUUCGGGc -3'
miRNA:   3'- gcaGUCGCGGC---UGGa---GCGAA-AAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66425 1 0.013733
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66491 0.8 0.237822
Target:  5'- gCGUCGGCGCCGAUC-CGUUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66556 1.1 0.002906
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66622 1 0.013733
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66633 0.66 0.915786
Target:  5'- -aUCGGCGCCGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gcAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66688 0.98 0.016661
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66754 0.87 0.090017
Target:  5'- gCGUCGGCGCCGACCUCaCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGcGAAAAGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.