miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 971 0.69 0.809375
Target:  5'- uCGUCGGCGUCGAUCggCGCagcagCGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGa-GCGaaaa-GCCc -5'
21283 3' -55.4 NC_004778.3 + 8321 0.66 0.928492
Target:  5'- uG-CAGCuCUGACCUCGUUUUUauuguugcucugaaUGGGg -3'
miRNA:   3'- gCaGUCGcGGCUGGAGCGAAAA--------------GCCC- -5'
21283 3' -55.4 NC_004778.3 + 12732 0.67 0.873906
Target:  5'- uGUCGuaaugugccGCGCCGAUUcCGCUg-UCGGGc -3'
miRNA:   3'- gCAGU---------CGCGGCUGGaGCGAaaAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 19682 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 19748 1.1 0.002906
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 19813 1 0.013733
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 19879 0.82 0.190556
Target:  5'- gCGUCGGCGCCGACCUCGCa------- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaaaagccc -5'
21283 3' -55.4 NC_004778.3 + 19890 0.68 0.854299
Target:  5'- gGUCGGCGCUGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 19913 0.98 0.016661
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 19968 1.1 0.002906
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 20021 0.82 0.187718
Target:  5'- gGUCGGCGCCGACgcaCguuuaaagauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 20034 1.1 0.002906
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGGGa -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 20177 0.82 0.185381
Target:  5'- gGUCGGCGCCGAcgcacguCCaaagauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCU-------GG-----------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 21089 0.66 0.919222
Target:  5'- gCGUCAGCGCgGugCagccCGCggagCGGa -3'
miRNA:   3'- -GCAGUCGCGgCugGa---GCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 23961 0.91 0.051225
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5'
21283 3' -55.4 NC_004778.3 + 24027 0.91 0.052632
Target:  5'- gCGUCAGCGCCGACCgCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24093 0.92 0.042354
Target:  5'- gCGUCAGCGCCGACCUCGCgUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24159 0.91 0.051225
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5'
21283 3' -55.4 NC_004778.3 + 24225 0.91 0.052632
Target:  5'- gCGUCAGCGCCGACCgCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24291 0.92 0.042354
Target:  5'- gCGUCAGCGCCGACCUCGCgUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaAAAGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.