miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 19682 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122309 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122407 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122556 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122666 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66556 1.1 0.002906
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 20034 1.1 0.002906
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGGGa -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 19968 1.1 0.002906
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 19748 1.1 0.002906
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99515 1.09 0.00353
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66622 1 0.013733
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66425 1 0.013733
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 19813 1 0.013733
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 19913 0.98 0.016661
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66688 0.98 0.016661
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122498 0.96 0.023836
Target:  5'- ---aAGCGCCGACCUCGCUUUUCGGGa -3'
miRNA:   3'- gcagUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122618 0.96 0.025884
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCu-- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 122147 0.93 0.040107
Target:  5'- gCGUCAGCGCCGACCUUGCUUUUCa-- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 24093 0.92 0.042354
Target:  5'- gCGUCAGCGCCGACCUCGCgUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24291 0.92 0.042354
Target:  5'- gCGUCAGCGCCGACCUCGCgUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaAAAGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.