Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21283 | 5' | -45.7 | NC_004778.3 | + | 99605 | 0.71 | 0.981683 |
Target: 5'- gUUgUCGAAAAGCauGUGCUAUUUUUAg -3' miRNA: 3'- -AAgAGCUUUUCGcuCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 99771 | 0.8 | 0.684965 |
Target: 5'- ---cCGAAAAGCGAGUGUUAUUUUUAg -3' miRNA: 3'- aagaGCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 99845 | 0.86 | 0.412243 |
Target: 5'- gUCUguaccCGAAAAGCGAGUGCUAUUUUUAa -3' miRNA: 3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 99911 | 0.86 | 0.412243 |
Target: 5'- gUCUguaccCGAAAAGCGAGUGCUAUUUUUAa -3' miRNA: 3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 99969 | 0.85 | 0.422013 |
Target: 5'- ---cCGAAAAGCGAGUGCUAUUUUUAa -3' miRNA: 3'- aagaGCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 100043 | 0.86 | 0.412243 |
Target: 5'- gUCUguaccCGAAAAGCGAGUGCUAUUUUUAa -3' miRNA: 3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 100101 | 0.85 | 0.422013 |
Target: 5'- ---cCGAAAAGCGAGUGCUAUUUUUAg -3' miRNA: 3'- aagaGCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 122399 | 0.74 | 0.94672 |
Target: 5'- -aCUCGAAAAGCGAGgucgGCgccGUCUa-- -3' miRNA: 3'- aaGAGCUUUUCGCUCa---CGa--UAGAaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 122528 | 0.9 | 0.262053 |
Target: 5'- gUUCUCGAAAAGCGAGUGCUAUa---- -3' miRNA: 3'- -AAGAGCUUUUCGCUCACGAUAgaaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 122590 | 0.9 | 0.262053 |
Target: 5'- gUUCUCGAAAAGCGAGUGCUAUa---- -3' miRNA: 3'- -AAGAGCUUUUCGCUCACGAUAgaaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 122638 | 0.9 | 0.262053 |
Target: 5'- uUUCUCGAAAAGCGAGUGCUAUa---- -3' miRNA: 3'- -AAGAGCUUUUCGCUCACGAUAgaaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 122700 | 0.78 | 0.782924 |
Target: 5'- gUUCUCGAAAAaCaAGUGCUAUCUUUAg -3' miRNA: 3'- -AAGAGCUUUUcGcUCACGAUAGAAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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