Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21283 | 5' | -45.7 | NC_004778.3 | + | 19716 | 1.06 | 0.031003 |
Target: 5'- gUUCUCGAAAAGCGAGUGCUAUCUUUAg -3' miRNA: 3'- -AAGAGCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 19766 | 0.72 | 0.973559 |
Target: 5'- cUUUUCGGGcacGAGCGuuaucgaaaaacaAGUGCUAUCUUUAa -3' miRNA: 3'- -AAGAGCUU---UUCGC-------------UCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 19843 | 0.91 | 0.211038 |
Target: 5'- gUCUguaccCGAAAAGCGAGUGCUAUCUUUAa -3' miRNA: 3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 19970 | 0.73 | 0.951426 |
Target: 5'- gUUCUCGAAAAGCGAGgucgGCg--CUg-- -3' miRNA: 3'- -AAGAGCUUUUCGCUCa---CGauaGAaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 19998 | 0.91 | 0.229088 |
Target: 5'- gUCUguaccCGAAAAGCGAGUGCUAUCUUUGg -3' miRNA: 3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 20070 | 0.71 | 0.985824 |
Target: 5'- gUUCUCGAAAAGCGAGgucgGCg------- -3' miRNA: 3'- -AAGAGCUUUUCGCUCa---CGauagaaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66459 | 1.06 | 0.031003 |
Target: 5'- gUUCUCGAAAAGCGAGUGCUAUCUUUAg -3' miRNA: 3'- -AAGAGCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66524 | 0.95 | 0.126756 |
Target: 5'- gUUUUUGAAAAGCGAGUGCUAUCUUUAg -3' miRNA: 3'- -AAGAGCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66581 | 0.69 | 0.995732 |
Target: 5'- -aCUCGAAAAGCGAGgucgGCg--CUg-- -3' miRNA: 3'- aaGAGCUUUUCGCUCa---CGauaGAaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66590 | 1.06 | 0.031003 |
Target: 5'- gUUCUCGAAAAGCGAGUGCUAUCUUUAg -3' miRNA: 3'- -AAGAGCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66652 | 0.91 | 0.229088 |
Target: 5'- gUCUguaccCGAAAAGCGAGUGCUAUCUUUGg -3' miRNA: 3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66718 | 0.91 | 0.229088 |
Target: 5'- gUCUguaccCGAAAAGCGAGUGCUAUCUUUGg -3' miRNA: 3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66779 | 0.73 | 0.951426 |
Target: 5'- gUUCUCGAAAAGCGAGgucgGCg--CUg-- -3' miRNA: 3'- -AAGAGCUUUUCGCUCa---CGauaGAaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66784 | 0.73 | 0.967441 |
Target: 5'- gUCUguacgCGAAAAaCGAGUGCUAUCUUa- -3' miRNA: 3'- aAGA-----GCUUUUcGCUCACGAUAGAAau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66845 | 0.71 | 0.985824 |
Target: 5'- gUUCUCGAAAAGCGAGgucgGCg------- -3' miRNA: 3'- -AAGAGCUUUUCGCUCa---CGauagaaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66855 | 0.81 | 0.662273 |
Target: 5'- ---cCGAAAAGCGAG-GCUAUCUUUAg -3' miRNA: 3'- aagaGCUUUUCGCUCaCGAUAGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 66911 | 0.67 | 0.999537 |
Target: 5'- gUUCUCGAAAAGUGAGgucgGCg------- -3' miRNA: 3'- -AAGAGCUUUUCGCUCa---CGauagaaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 80659 | 0.7 | 0.994957 |
Target: 5'- -aCUCGAAcAGCGuGUGCcacUCUUUAa -3' miRNA: 3'- aaGAGCUUuUCGCuCACGau-AGAAAU- -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 99417 | 0.69 | 0.995732 |
Target: 5'- -aCUCGGAAAGCGAGgucgGCgcUCa--- -3' miRNA: 3'- aaGAGCUUUUCGCUCa---CGauAGaaau -5' |
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21283 | 5' | -45.7 | NC_004778.3 | + | 99435 | 0.91 | 0.222931 |
Target: 5'- gUUCUCGAAAAGCGAGcGCUAUCUUa- -3' miRNA: 3'- -AAGAGCUUUUCGCUCaCGAUAGAAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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